Alternatives and similar repositories for seqfilter

Users that are interested in seqfilter are comparing it to the libraries listed below

• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆33Updated 2 years ago
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆40Updated 2 weeks ago
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆50Updated 2 months ago
• Plant-Food-Research-Open / assemblyqc
  A Nextflow pipeline for evaluating assembly quality
  ☆38Updated 2 months ago
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆36Updated 3 years ago
• TF-Chan-Lab / panGraphViewer
  Show pangenome graphs in an easy way
  ☆57Updated 6 months ago
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆60Updated last week
• ChongLab / Inspector
  A tool for evaluate long-read de novo assembly results
  ☆48Updated last year
• nanoporetech / pipeline-umi-amplicon
  Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers
  ☆35Updated last year
• maickrau / ribotin
  ☆38Updated last month
• HuffordLab / GenomeQC
  ☆35Updated 5 years ago
• mrvollger / SDA
  Segmental Duplication Assembler (SDA).
  ☆43Updated 2 years ago
• Maggi-Chen / Inspector
  A tool for evaluating long-read de novo assembly results
  ☆52Updated last year
• PacificBiosciences / apps-scripts
  Miscellaneous scripts for applications of PacBio systems
  ☆27Updated 3 years ago
• vgteam / giraffe-sv-paper
  ☆44Updated last year
• uio-cels / NucDiff
  In-depth characterization and annotation of differences between two sets of DNA sequences
  ☆63Updated 5 years ago
• yeeus / GCI
  A program for assessing the T2T genome continuity
  ☆92Updated last month
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆47Updated 4 years ago
• PacificBiosciences / sawfish
  Joint structural variant and copy number variant caller for HiFi sequencing data
  ☆69Updated 3 months ago
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆95Updated 9 months ago
• PacificBiosciences / HiFiCNV
  Copy number variant caller and depth visualization utility for PacBio HiFi reads
  ☆47Updated last year
• shingocat / lrscaf
  TGS scaffolding
  ☆47Updated 4 years ago
• PacificBiosciences / jasmine
  Call select base modifications in PacBio HiFi reads
  ☆15Updated 2 months ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆59Updated 2 years ago
• farhangus / Sniffles2_plot
  ☆33Updated last year
• mrvollger / SafFire
  ☆31Updated 8 months ago
• DovetailGenomics / HiRise_July2015_GR
  test repository
  ☆29Updated 2 years ago
• 0xTCG / biser
  A fast tool for detecting and decomposing segmental duplications in genome assemblies
  ☆55Updated 6 months ago
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆49Updated 2 months ago
• kjenike / panagram
  ☆68Updated 2 weeks ago