giesselmann / STRique
Nanopore raw signal repeat detection pipeline
☆45Updated last year
Related projects ⓘ
Alternatives and complementary repositories for STRique
- Analysis pipelines from Oxford Nanopore Technologies' Research Division☆50Updated 4 years ago
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆57Updated 9 months ago
- Splitting of sequence reads by internal adapter sequence search☆52Updated last year
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆29Updated 8 months ago
- ☆48Updated 2 months ago
- Toolkit for calling structural variants using short or long reads☆98Updated this week
- ☆79Updated 6 months ago
- ☆46Updated 2 weeks ago
- MarginPolish: Graph based assembly polishing☆45Updated 3 years ago
- Pipeline to convert a haploid assembly into diploid☆92Updated 6 months ago
- UCSC Nanopore☆43Updated 5 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 3 years ago
- Analysis components from Oxford Nanopore Research☆93Updated 2 months ago
- Methylation Phasing for Nanopore Sequencing☆44Updated last year
- Snakemake pipelines for nanopore sequencing data archiving and processing☆88Updated 2 years ago
- ☆46Updated 4 months ago
- ☆34Updated last week
- Research release basecalling models and configurations☆103Updated 5 months ago
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆58Updated 5 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆108Updated 2 months ago
- Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.☆26Updated last week
- Python client library for Guppy☆30Updated 2 years ago
- ☆72Updated last month
- ☆47Updated 4 years ago
- Simple pileup-based variant caller☆83Updated 7 months ago
- Tandem repeat expansion detection or genotyping from long-read alignments☆70Updated last month
- Predictive kmer models for development use☆53Updated last year