giesselmann / STRiqueLinks
Nanopore raw signal repeat detection pipeline
☆45Updated 2 years ago
Alternatives and similar repositories for STRique
Users that are interested in STRique are comparing it to the libraries listed below
Sorting:
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- Toolkit for calling structural variants using short or long reads☆109Updated last month
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆59Updated last year
- Analysis pipelines from Oxford Nanopore Technologies' Research Division☆50Updated 5 years ago
- ☆30Updated 4 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆103Updated 4 years ago
- ☆49Updated last year
- HMM-HDP models for MinION signal alignments☆46Updated 8 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- A python program to call methylation (m6A in DNA) from nanopore signal data☆47Updated 4 years ago
- ☆82Updated 8 months ago
- Structural Variants Pipeline for Long Reads☆44Updated 7 years ago
- ☆49Updated last year
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- a hidden Markov model to infer simple repeats from genome sequences☆37Updated 4 years ago
- Flip-flop basecaller for Oxford Nanopore reads☆100Updated 3 years ago
- Analysis components from Oxford Nanopore Research☆96Updated last year
- MarginPolish: Graph based assembly polishing☆47Updated 4 years ago
- ☆79Updated 5 years ago
- Data from the Human PanGenomics Project☆61Updated 4 years ago
- Set of tools to manipulate and visualize modified base bam files☆57Updated 3 years ago
- SquiggleKit: A toolkit for manipulating nanopore signal data☆128Updated last year
- Copy number caller for long read data including SNV utilization☆68Updated 7 months ago
- Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.☆33Updated 3 weeks ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆39Updated 2 years ago
- ☆46Updated 5 years ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆45Updated 5 years ago
- ☆50Updated last month
- Tools for the analysis of structural variation in genomes☆81Updated last year
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago