Alternatives and similar repositories for STRique:

Users that are interested in STRique are comparing it to the libraries listed below

• nanoporetech / katuali
  Analysis pipelines from Oxford Nanopore Technologies' Research Division
  ☆50Updated 4 years ago
• rrazaghi / modbamtools
  Set of tools to manipulate and visualize modified base bam files
  ☆54Updated 2 years ago
• MeHelmy / princess
  ☆79Updated last month
• lh3 / dipcall
  Reference-based variant calling pipeline for a pair of phased haplotype assemblies
  ☆100Updated 3 years ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆100Updated 3 months ago
• comprna / RATTLE
  Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
  ☆57Updated last year
• PacificBiosciences / pb-human-wgs-workflow-snakemake
  DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads
  ☆38Updated last year
• PacificBiosciences / jasmine
  Call select base modifications in PacBio HiFi reads
  ☆6Updated 2 months ago
• vahidAK / NanoMethPhase
  Methylation Phasing for Nanopore Sequencing
  ☆48Updated 2 years ago
• nanoporetech / duplex-tools
  Splitting of sequence reads by internal adapter sequence search
  ☆50Updated last year
• daewoooo / SVbyEye
  ☆88Updated 2 months ago
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆89Updated last week
• nanoporetech / pinfish
  Tools to annotate genomes using long read transcriptomics data
  ☆45Updated 4 years ago
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆46Updated 4 years ago
• nanoporetech / flappie
  Flip-flop basecaller for Oxford Nanopore reads
  ☆99Updated 3 years ago
• benedictpaten / marginAlign
  UCSC Nanopore
  ☆43Updated 5 years ago
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆80Updated 2 months ago
• Maggi-Chen / DeBreak
  Structural variant caller for real-time long-read sequencing data
  ☆56Updated 2 years ago
• mcfrith / tandem-genotypes
  ☆48Updated 10 months ago
• ArimaGenomics / mapping_pipeline
  Mapping pipeline for data generated using Arima-HiC
  ☆76Updated 11 months ago
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆39Updated 2 months ago
• kjenike / panagram
  ☆61Updated last month
• nanoporetech / pomoxis
  Analysis components from Oxford Nanopore Research
  ☆93Updated 7 months ago
• mapleforest / HaploMerger2
  ☆43Updated 8 years ago
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆58Updated last year
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆102Updated this week
• PacificBiosciences / sv-benchmark
  Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data
  ☆51Updated 4 years ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆114Updated last week
• lh3 / srf
  SRF: Satellite Repeat Finder
  ☆95Updated last year
• shilpagarg / DipAsm
  ☆76Updated 4 years ago