Nanopore raw signal repeat detection pipeline
☆45Mar 17, 2023Updated 3 years ago
Alternatives and similar repositories for STRique
Users that are interested in STRique are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆24Feb 28, 2023Updated 3 years ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Jul 2, 2020Updated 6 years ago
- a hidden Markov model to infer simple repeats from genome sequences☆39Feb 19, 2021Updated 5 years ago
- Noise-Cancelling Repeat Finder☆27Apr 2, 2026Updated 6 months ago
- Tandem Repeats Caller for LOng Reads☆17May 28, 2021Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆52Jun 25, 2024Updated 2 years ago
- NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data☆20Jan 13, 2026Updated 9 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆92Feb 2, 2022Updated 4 years ago
- Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…☆204May 4, 2023Updated 3 years ago
- TRGT Repeat expansion summary☆10Apr 10, 2023Updated 3 years ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆31Sep 19, 2022Updated 4 years ago
- Determining tandem repeat lengths using raw nanopore signals.☆15Sep 11, 2023Updated 3 years ago
- Miscellaneous scripts for applications of PacBio systems☆27Apr 19, 2022Updated 4 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 6 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆19Jan 16, 2026Updated 9 months ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆33Feb 25, 2021Updated 5 years ago
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆14Apr 5, 2025Updated last year
- Linear-time, low-memory construction of variation graphs☆20Oct 14, 2026Updated 2 weeks ago
- PEPPER-Margin-DeepVariant☆261Jan 12, 2024Updated 2 years ago
- ☆14Sep 11, 2023Updated 3 years ago
- Structural variation caller using third generation sequencing☆686Oct 18, 2026Updated last week
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆273Oct 13, 2022Updated 4 years ago
- Nanopanel2: a somatic variant caller for Nanopore panel sequencing data☆11Sep 21, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Flip-flop basecaller for Oxford Nanopore reads☆97Jan 13, 2022Updated 4 years ago
- Detect novel (and reference) STR expansions from short-read data☆72Dec 6, 2025Updated 10 months ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆113Oct 25, 2021Updated 5 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- A machine learning tool to predict tandem repeat pathogenicity☆12Jan 2, 2024Updated 2 years ago
- ☆31Feb 5, 2021Updated 5 years ago
- Pre-mAsking Long reads for Mobile Element inseRtion☆10Feb 27, 2023Updated 3 years ago
- Tandem repeat expansion detection or genotyping from long-read alignments☆174Mar 25, 2026Updated 7 months ago
- This repository contains the code developed for the NanOlympicsMod project.☆12Jan 29, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A customizable genetic variants file format converter.☆11May 22, 2026Updated 5 months ago
- A suite of tools for detecting expansions of short tandem repeats☆86Jul 6, 2023Updated 3 years ago
- Accelerated Dynamic Time Warping for ONT Read Until☆11Oct 2, 2024Updated 2 years ago
- BlockPolish: accurate polishing of long-read assembly via block divide-and-conquer☆17Jun 15, 2023Updated 3 years ago
- VCF files of SVs using long-read sequencing (LRS).☆22Dec 17, 2021Updated 4 years ago
- A tool for diagnosing SMA in exome, genome or targeted sequencing data☆14Jul 1, 2026Updated 3 months ago
- Tools for the analysis of structural variation in genomes☆81Feb 23, 2026Updated 8 months ago