nanoporetech / pipeline-umi-ampliconLinks
Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers
☆34Updated last year
Alternatives and similar repositories for pipeline-umi-amplicon
Users that are interested in pipeline-umi-amplicon are comparing it to the libraries listed below
Sorting:
- catalog for long-read sequencing tools☆32Updated 2 years ago
- perSVade: personalized Structural Variation detection☆40Updated 2 months ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- ☆30Updated 4 years ago
- InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..☆31Updated last year
- Workflows for metagenomic sequence data processing and analysis.☆16Updated 6 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆68Updated this week
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆42Updated 5 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Generate unique KMERs for every contig in a FASTA file☆48Updated 3 years ago
- A fast tool for hybrid genome assembly of long and short reads☆78Updated 5 years ago
- ☆49Updated last year
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆48Updated 3 weeks ago
- In-silico PCR, primer design and padlock design for in-situ sequencing☆51Updated 3 months ago
- python plotly Circos from VCF☆40Updated last year
- A local-haplotagging-based small and structural variant caller☆89Updated this week
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated last year
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- The buttery eel - a slow5 guppy/dorado basecaller wrapper☆41Updated 3 months ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆31Updated 4 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 4 years ago
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆26Updated 3 years ago
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆20Updated 4 years ago
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- ☆29Updated 4 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago