Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers
☆35Feb 27, 2024Updated 2 years ago
Alternatives and similar repositories for pipeline-umi-amplicon
Users that are interested in pipeline-umi-amplicon are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes☆15Apr 28, 2021Updated 5 years ago
- ☆83Oct 27, 2020Updated 6 years ago
- ☆14Sep 26, 2019Updated 7 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆43Mar 20, 2026Updated 7 months ago
- ☆14Apr 25, 2026Updated 6 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- AmpliCI, a model-based algorithm for denoising Illumina amplicon data.☆25Nov 28, 2025Updated 11 months ago
- Correcting errors in noisy long reads using variation graphs☆53Nov 17, 2022Updated 3 years ago
- Software for Ontogenic aNalysis of Antibody Repertoires☆19Jun 30, 2026Updated 4 months ago
- DegenPrimer is a tool to check the quality of degenerate primers by simulating PCR☆17May 12, 2022Updated 4 years ago
- Nanopanel2: a somatic variant caller for Nanopore panel sequencing data☆11Sep 21, 2021Updated 5 years ago
- INC-Seq: Accurate single molecule reads using nanopore sequencing☆16Sep 11, 2020Updated 6 years ago
- A quality-checked and publicly available database of full-length 16S-ITS-23S rRNA operon sequences☆15Jul 9, 2026Updated 3 months ago
- Tools for finding mobile element insertions from single-end datasets☆24Dec 14, 2019Updated 6 years ago
- ☆22Sep 4, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Jul 13, 2023Updated 3 years ago
- Nanopore UMI-linked consensus sequencing☆18Feb 11, 2021Updated 5 years ago
- ☆27Dec 29, 2020Updated 5 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆33Feb 25, 2021Updated 5 years ago
- Webin command line submission program.☆43Updated this week
- Bioinformatic Tools for analyzing targeted amplicon sequencing developed by Nicholas Hathaway of Bailey Lab☆18Updated this week
- Hierarchical clustering of cgMLST☆13Nov 20, 2023Updated 2 years ago
- Sorts amplicons from Nanopore sequencing data based on similarity☆46Oct 9, 2025Updated last year
- Package to design primers for MutaSeq and related methods☆11Jan 15, 2021Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆12Dec 4, 2023Updated 2 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆40Jun 6, 2023Updated 3 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Feb 27, 2019Updated 7 years ago
- [DEPRECATED] MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers☆22Aug 13, 2026Updated 2 months ago
- akutils with massive updates over v1.1 to functionality and command line interface.☆14Jun 25, 2019Updated 7 years ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Jan 26, 2022Updated 4 years ago
- ☆10Nov 4, 2021Updated 4 years ago
- Versatile FASTA/FASTQ demultiplexer.☆34Jun 10, 2026Updated 4 months ago
- Importing vg json graphs to Python data structures.☆12Nov 11, 2020Updated 5 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆60Oct 14, 2024Updated 2 years ago
- 🛜 A lightweight immune repertoire browser☆28Dec 10, 2019Updated 6 years ago
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆22Mar 27, 2020Updated 6 years ago
- ☆31Feb 5, 2021Updated 5 years ago
- Multiplex Primer Design☆13May 3, 2020Updated 6 years ago
- Perturb-seq analysis package☆16May 2, 2024Updated 2 years ago
- A versatile compressor of third generation sequencing reads.☆53Mar 24, 2024Updated 2 years ago