Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers
☆35Feb 27, 2024Updated 2 years ago
Alternatives and similar repositories for pipeline-umi-amplicon
Users that are interested in pipeline-umi-amplicon are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes☆15Apr 28, 2021Updated 4 years ago
- ☆81Oct 27, 2020Updated 5 years ago
- ☆29Feb 5, 2021Updated 5 years ago
- DegenPrimer is a tool to check the quality of degenerate primers by simulating PCR☆17May 12, 2022Updated 3 years ago
- Software for Ontogenic aNalysis of Antibody Repertoires☆19Sep 25, 2025Updated 6 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Correcting errors in noisy long reads using variation graphs☆51Nov 17, 2022Updated 3 years ago
- A tutorial on how to annotate and interpret novel mammalian reference genomes☆23Mar 4, 2026Updated 3 weeks ago
- ☆26Dec 29, 2020Updated 5 years ago
- Package to design primers for MutaSeq and related methods☆11Jan 15, 2021Updated 5 years ago
- Hierarchical clustering of cgMLST☆13Nov 20, 2023Updated 2 years ago
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Jul 13, 2023Updated 2 years ago
- MirMachine, a command line tool to detect microRNA homologs in genome sequences.☆13Updated this week
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Mar 20, 2026Updated last week
- Filter fasta/fastq(.gz) files by ID and/or sequence length☆15Feb 8, 2020Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Feb 25, 2021Updated 5 years ago
- ☆12Dec 4, 2023Updated 2 years ago
- ☆10Nov 4, 2021Updated 4 years ago
- Importing vg json graphs to Python data structures.☆12Nov 11, 2020Updated 5 years ago
- Optimise PCR primer-set grouping for genetics research☆18Feb 24, 2026Updated last month
- Population genetics analysis on VG☆17Apr 22, 2021Updated 4 years ago
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Aug 9, 2022Updated 3 years ago
- Tools for finding mobile element insertions from single-end datasets☆24Dec 14, 2019Updated 6 years ago
- 🍶 Genome assembly with short sequence reads☆25Mar 10, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ⛏ HLA predictions from NGS shotgun data☆55Jun 6, 2025Updated 9 months ago
- Multiplex Primer Design☆12May 3, 2020Updated 5 years ago
- A easy-to-use Python API for Primer3 primer design.☆16Nov 10, 2022Updated 3 years ago
- ☆15Sep 26, 2019Updated 6 years ago
- Removing PCR duplicates for sequencing reads.☆14Sep 8, 2020Updated 5 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆58Oct 14, 2024Updated last year
- Reworked clustering metrics for assessing performance in imbalanced settings☆18Jun 3, 2024Updated last year
- Nextflow pipeline for Mutect2 somatic variant calling best practices☆23Jun 14, 2024Updated last year
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Nov 2, 2018Updated 7 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Data and workflow examples☆16Apr 9, 2018Updated 7 years ago
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated 9 months ago
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆208Updated this week
- python API to the CoGAPS NMF package☆19May 19, 2025Updated 10 months ago
- Pipeline to convert a haploid assembly into diploid☆111Jan 23, 2025Updated last year
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆22Mar 27, 2020Updated 6 years ago
- Polyidus provides a framework to catch chimeric DNA sequences with a tale of python☆10Jul 14, 2023Updated 2 years ago