pepebonet / DeepMPLinks
DeepMP is a computational tool to detect DNA modifications in Nanopore sequencing data
☆27Updated 3 years ago
Alternatives and similar repositories for DeepMP
Users that are interested in DeepMP are comparing it to the libraries listed below
Sorting:
- A tutorial on structural variant calling for short read sequencing data☆39Updated 10 months ago
- Human pan-genome analysis pipeline☆30Updated 5 years ago
- Ultra rapid nanopore whole genome sequencing pipeline, published in https://www.nature.com/articles/s41587-022-01221-5☆19Updated last year
- Two pass alignment for long reads☆22Updated 4 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆31Updated 7 years ago
- Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation☆21Updated last week
- Structural variant (SV) analysis tools☆36Updated last year
- ☆20Updated last year
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.☆20Updated last week
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 6 months ago
- Ultra-fast, high-performing structural variation (SV) detector☆23Updated 2 years ago
- Immuological gene typing and annotation for genome assembly☆37Updated 5 months ago
- A pipeline creation tool using Snakemake☆11Updated last week
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆23Updated 2 months ago
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆16Updated 3 months ago
- ☆22Updated last month
- POSTRE: Prediction Of STRuctural variant Effects☆27Updated 6 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Updated last year
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- Structural variant merging tool☆53Updated last year
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆19Updated 4 years ago
- ☆32Updated 2 years ago
- Count kmers with a more efficient (faster) hash table☆23Updated last year
- Automatised pipeline of ConsensuSV workflow.☆24Updated 2 years ago