pepebonet / DeepMP

Related projects ⓘ

Alternatives and complementary repositories for DeepMP

• TimoLassmann / samstat
  SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.
  ☆24Updated last year
• jsh58 / DMRfinder
  Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data
  ☆26Updated last year
• zstephens / telogator2
  A method for measuring allele-specific TL and characterizing telomere variant repeat (TVR) sequences from long reads.
  ☆12Updated last week
• tobiasrausch / vc
  A tutorial on structural variant calling for short read sequencing data
  ☆26Updated 3 weeks ago
• gsneha26 / urWGS
  Ultra rapid nanopore whole genome sequencing pipeline, published in https://www.nature.com/articles/s41587-022-01221-5
  ☆18Updated 4 months ago
• multiz / multiz
  DNA multiple sequence aligner, official version from Penn State's Miller Lab
  ☆31Updated 5 years ago
• uedaLabR / nanoDoc
  RNA modification detection using Nanopore raw reads with Deep One Class classification
  ☆19Updated 3 years ago
• LappalainenLab / lorals
  ☆33Updated last year
• ngs-docs / 2021-GGG298
  Winter 2021, GGG 298 - Tools for Data Intensive Research - UC Davis
  ☆12Updated 3 years ago
• cortes-ciriano-lab / ReConPlot
  ☆21Updated 2 weeks ago
• biocorecrg / MOP2
  Master of Pores 2
  ☆23Updated last year
• joshidhaivat / QAlign
  ☆9Updated 2 years ago
• a2iEditing / deNovo-Detect
  ☆11Updated 2 years ago
• vicsanga / Postre
  POSTRE: Prediction Of STRuctural variant Effects
  ☆21Updated 2 months ago
• novoalab / modPhred
  modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data
  ☆16Updated 6 months ago
• ablab / rnaquast
  Quality assessment of de novo transcriptome assemblies from RNA-Seq data
  ☆19Updated 3 weeks ago
• novoalab / Nano3P_Seq
  Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)
  ☆12Updated last year
• seqcode / allo
  Allo: a multi-mapped read rescue strategy for gene regulatory analyses
  ☆23Updated 2 months ago
• gimelbrantlab / Qllelic
  Enabling differential allele-specific analysis
  ☆11Updated 2 years ago
• gagneurlab / splicemap
  ☆18Updated last month
• zavolanlab / zarp
  The Zavolab Automated RNA-seq Pipeline
  ☆35Updated 3 weeks ago
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 3 weeks ago
• homeveg / nuctools
  software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data
  ☆16Updated 4 years ago
• bergmanlab / ngs_te_mapper
  Software for detecting transposable element insertions from next-generation sequencing data
  ☆14Updated 3 years ago
• DecodeGenetics / svimmer
  Structural variant merging tool
  ☆46Updated 2 months ago
• TomSkelly / MatchAnnot
  Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.
  ☆24Updated 9 years ago
• EliseCoopman / methylmap
  Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.
  ☆18Updated last week
• mulinlab / VarNote
  Fast and scalable variant annotation tool
  ☆30Updated 2 years ago
• novoalab / nanoRMS
  Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…
  ☆23Updated last year
• Janga-Lab / Penguin
  Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data
  ☆13Updated 3 years ago