pepebonet / DeepMPLinks
DeepMP is a computational tool to detect DNA modifications in Nanopore sequencing data
☆27Updated 3 years ago
Alternatives and similar repositories for DeepMP
Users that are interested in DeepMP are comparing it to the libraries listed below
Sorting:
- ☆20Updated last year
- Two pass alignment for long reads☆22Updated 4 years ago
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆30Updated 7 years ago
- Immuological gene typing and annotation for genome assembly☆38Updated 6 months ago
- Count kmers with a more efficient (faster) hash table☆23Updated last year
- A tutorial on structural variant calling for short read sequencing data☆39Updated 11 months ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- A computational algorithm and software tool for fast and accurate detection of gene fusion by long-read transcriptome sequencing☆21Updated 4 years ago
- A pipeline creation tool using Snakemake☆11Updated last week
- Structural variant VCF annotation, duplicate removal and comparison☆34Updated 7 months ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- Master of Pores 2☆23Updated 9 months ago
- Human pan-genome analysis pipeline☆30Updated 5 years ago
- ☆23Updated 9 months ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆25Updated 3 months ago
- Structural variant (SV) analysis tools☆36Updated last year
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.☆21Updated last month
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated last year
- Ultra rapid nanopore whole genome sequencing pipeline, published in https://www.nature.com/articles/s41587-022-01221-5☆19Updated last year
- interactive Multi Objective K-mer Analysis☆23Updated 2 years ago
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Updated 3 years ago
- ☆11Updated 3 months ago
- ☆33Updated 2 years ago
- ☆26Updated 4 years ago
- Metagenomics microbial abundance quantification☆27Updated 3 years ago
- Gap2Seq is a gap filling and insertion genotyping tool.☆22Updated last year
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago
- Structural variant merging tool☆54Updated last year
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago