DeepMP is a computational tool to detect DNA modifications in Nanopore sequencing data
☆27Mar 18, 2022Updated 4 years ago
Alternatives and similar repositories for DeepMP
Users that are interested in DeepMP are comparing it to the libraries listed below
Sorting:
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Jul 3, 2023Updated 2 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 4 months ago
- NANOME pipeline (Nanopore long-read sequencing consensus DNA methylation detection method and pipeline)☆34Mar 13, 2026Updated last week
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Feb 25, 2021Updated 5 years ago
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆22Jan 23, 2026Updated last month
- ☆10Mar 11, 2025Updated last year
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 3 months ago
- ☆84Mar 3, 2025Updated last year
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Mar 4, 2019Updated 7 years ago
- ☆29Feb 5, 2021Updated 5 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications☆104Mar 8, 2023Updated 3 years ago
- fork of dorado that supports S/BLOW5☆12Jan 8, 2026Updated 2 months ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆73May 20, 2022Updated 3 years ago
- NanoReviser: An Error-correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm☆28May 9, 2024Updated last year
- Structural variant pipeline☆18Jun 25, 2020Updated 5 years ago
- DNN-based small variant caller☆12May 2, 2022Updated 3 years ago
- Non-parametric structural variant genotyper☆15Nov 18, 2021Updated 4 years ago
- ☆15Aug 22, 2023Updated 2 years ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆18Oct 4, 2022Updated 3 years ago
- De novo genome assembler.☆11Jul 30, 2018Updated 7 years ago
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated 2 months ago
- PECAT, a phased error correct and assembly tool☆59Dec 8, 2025Updated 3 months ago
- ☆46Jul 6, 2017Updated 8 years ago
- Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.☆105Jan 28, 2026Updated last month
- Scaffolding with assembly likelihood optimization☆21Dec 14, 2020Updated 5 years ago
- Sequencing analysis pipeline☆15Dec 12, 2025Updated 3 months ago
- NanopolishComp is a Python3 package for downstream analyses of Nanopolish output files☆10Dec 22, 2020Updated 5 years ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Jul 2, 2020Updated 5 years ago
- HMM-HDP models for MinION signal alignments☆46Apr 10, 2017Updated 8 years ago
- Updated figures for "A benchmarking of WGS-based structural variant callers" paper☆27Apr 3, 2022Updated 3 years ago
- ☆16Jan 10, 2022Updated 4 years ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆33Aug 9, 2022Updated 3 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆82Feb 14, 2025Updated last year
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆20Nov 18, 2022Updated 3 years ago
- snapper☆13Jul 8, 2024Updated last year
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.☆36Apr 4, 2025Updated 11 months ago
- A simple toolkit for manipulating nanopore signal data☆19Mar 14, 2026Updated last week