pepebonet / DeepMP
DeepMP is a computational tool to detect DNA modifications in Nanopore sequencing data
☆26Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for DeepMP
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- A tutorial on structural variant calling for short read sequencing data☆26Updated 3 weeks ago
- A method for measuring allele-specific TL and characterizing telomere variant repeat (TVR) sequences from long reads.☆12Updated 2 weeks ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆19Updated 2 weeks ago
- Ultra rapid nanopore whole genome sequencing pipeline, published in https://www.nature.com/articles/s41587-022-01221-5☆18Updated 4 months ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆23Updated 2 months ago
- ☆20Updated 11 months ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆15Updated 6 months ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆26Updated last year
- ☆33Updated last year
- Scripts for identifying sites with differential error rates in mapped nanopore DRS data☆11Updated 3 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- Two pass alignment for long reads☆20Updated 3 years ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆17Updated last year
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆31Updated 5 years ago
- FamDB file format library and utilities☆16Updated last week
- ☆21Updated last week
- Master of Pores 2☆23Updated last year
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 2 years ago
- Long read to rMATS☆31Updated last year
- perSVade: personalized Structural Variation detection☆36Updated 5 months ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 2 years ago
- Codes for the Iso-Seq variant-calling paper☆11Updated last year
- Direct RNA publication scripts☆11Updated 7 years ago
- ☆15Updated 2 years ago
- ☆11Updated 2 years ago
- Structural variant (SV) analysis tools☆36Updated 4 months ago
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆19Updated 3 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆45Updated 5 years ago
- This is the Haplotypo repository☆20Updated 5 months ago