pepebonet / DeepMP

Related projects ⓘ

Alternatives and complementary repositories for DeepMP

• TimoLassmann / samstat
  SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.
  ☆24Updated last year
• tobiasrausch / vc
  A tutorial on structural variant calling for short read sequencing data
  ☆26Updated 3 weeks ago
• zstephens / telogator2
  A method for measuring allele-specific TL and characterizing telomere variant repeat (TVR) sequences from long reads.
  ☆12Updated 2 weeks ago
• ablab / rnaquast
  Quality assessment of de novo transcriptome assemblies from RNA-Seq data
  ☆19Updated 2 weeks ago
• gsneha26 / urWGS
  Ultra rapid nanopore whole genome sequencing pipeline, published in https://www.nature.com/articles/s41587-022-01221-5
  ☆18Updated 4 months ago
• seqcode / allo
  Allo: a multi-mapped read rescue strategy for gene regulatory analyses
  ☆23Updated 2 months ago
• gjun / muCNV
  ☆20Updated 11 months ago
• novoalab / modPhred
  modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data
  ☆15Updated 6 months ago
• jsh58 / DMRfinder
  Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data
  ☆26Updated last year
• LappalainenLab / lorals
  ☆33Updated last year
• bartongroup / differr_nanopore_DRS
  Scripts for identifying sites with differential error rates in mapped nanopore DRS data
  ☆11Updated 3 years ago
• clemgoub / TypeTE
  Genotyping of segregating mobile elements insertions
  ☆19Updated 3 years ago
• bartongroup / 2passtools
  Two pass alignment for long reads
  ☆20Updated 3 years ago
• timplab / nanoNOMe
  nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis
  ☆17Updated last year
• multiz / multiz
  DNA multiple sequence aligner, official version from Penn State's Miller Lab
  ☆31Updated 5 years ago
• Dfam-consortium / FamDB
  FamDB file format library and utilities
  ☆16Updated last week
• cortes-ciriano-lab / ReConPlot
  ☆21Updated last week
• biocorecrg / MOP2
  Master of Pores 2
  ☆23Updated last year
• splicebox / PsiCLASS
  Simultaneous multi-sample transcript assembler for RNA-seq data
  ☆17Updated 2 years ago
• Xinglab / lr2rmats
  Long read to rMATS
  ☆31Updated last year
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆36Updated 5 months ago
• quinlan-lab / pathoscore
  pathoscore evaluates variant pathogenicity tools and scores.
  ☆21Updated 2 years ago
• vladimirsouza / lrRNAseqVariantCalling
  Codes for the Iso-Seq variant-calling paper
  ☆11Updated last year
• nanoporetech / dRNA-paper-scripts
  Direct RNA publication scripts
  ☆11Updated 7 years ago
• XiDsLab / TAGET
  ☆15Updated 2 years ago
• a2iEditing / deNovo-Detect
  ☆11Updated 2 years ago
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆36Updated 4 months ago
• uedaLabR / nanoDoc
  RNA modification detection using Nanopore raw reads with Deep One Class classification
  ☆19Updated 3 years ago
• lh3 / etrf
  Exact Tandem Repeat Finder (not a TRF replacement)
  ☆45Updated 5 years ago
• Gabaldonlab / haplotypo
  This is the Haplotypo repository
  ☆20Updated 5 months ago