Dot: An interactive dot plot viewer for comparative genomics
☆36May 4, 2023Updated 2 years ago
Alternatives and similar repositories for dot
Users that are interested in dot are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Nov 15, 2017Updated 8 years ago
- Simple tools for working with Hi-C data☆18Dec 19, 2018Updated 7 years ago
- Creates an N-chart for comparing assembly lengths, including script for counting assembly lengths from a fasta file☆13Feb 2, 2017Updated 9 years ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Feb 28, 2017Updated 9 years ago
- Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.☆11Feb 25, 2021Updated 5 years ago
- A tool for recovering synteny blocks from multiple alignment☆32Oct 18, 2021Updated 4 years ago
- Guided synteny alignment between duplicated genomes (within specified quota constraint)☆59Sep 5, 2017Updated 8 years ago
- ☆15Aug 6, 2018Updated 7 years ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆84May 25, 2021Updated 4 years ago
- A tool for discovering transposable elements and describing patterns of genome evolution☆31Apr 23, 2023Updated 2 years ago
- WGS (Wheat) Robust Assembly Pipeline☆22Sep 4, 2021Updated 4 years ago
- A comparative genome scaffolding tool☆16Oct 6, 2018Updated 7 years ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Oct 14, 2016Updated 9 years ago
- assembly evaluation tool☆35May 11, 2022Updated 3 years ago
- Code and files used in teaching and training courses.☆31Nov 25, 2016Updated 9 years ago
- Yet another Hi-C scaffolding tool☆22Oct 23, 2024Updated last year
- Repository of common bioinformatics scripts☆39Sep 21, 2021Updated 4 years ago
- Add multiple thread function for genome comparison☆16Sep 29, 2021Updated 4 years ago
- Modular Multi-scale Integrated Genome Graph Browser☆97Mar 7, 2026Updated 2 weeks ago
- ☆18Jun 30, 2023Updated 2 years ago
- ☆78Jun 12, 2020Updated 5 years ago
- BlasterJS - an open source JS library to display Blast results☆21Oct 18, 2019Updated 6 years ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆38Feb 15, 2025Updated last year
- An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.☆45Nov 25, 2022Updated 3 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Mar 3, 2025Updated last year
- Copycat is a simple script to capture and bin the read coverage across a genome from a bam file of read alignments. It relies on bedtoo…☆17Aug 24, 2016Updated 9 years ago
- ☆35Aug 18, 2024Updated last year
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆21Jun 26, 2024Updated last year
- 🗻 Visualization of genome/gene sequence synteny☆42Dec 13, 2023Updated 2 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Dec 6, 2018Updated 7 years ago
- Genome assembly soft-masking using Red (REpeat Detector)☆18Dec 7, 2018Updated 7 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆109Jun 17, 2022Updated 3 years ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 6 months ago
- Pipeline for structural variant image curation and analysis.☆49Dec 5, 2021Updated 4 years ago
- A module for improving the insertion sequences of structural variant calls☆33Jul 14, 2021Updated 4 years ago
- Subset of fast5 files contained in a fastq, BAM, or SAM file.☆12Mar 29, 2023Updated 2 years ago
- Dotplot large Genomes in an Interactive, Efficient and Simple way☆113Feb 20, 2026Updated last month
- Same species annotation lift over pipeline.☆97Jul 21, 2023Updated 2 years ago
- ☆12Jun 7, 2024Updated last year