MariaNattestad / dot
Dot: An interactive dot plot viewer for comparative genomics
☆33Updated last year
Related projects ⓘ
Alternatives and complementary repositories for dot
- A Nextflow workflow to generate lift over files for any pair of genomes☆54Updated 2 months ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 3 years ago
- Improved Phased Assembler☆28Updated 2 years ago
- ☆29Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 4 years ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 5 years ago
- Variant annotation and merging pipeline☆28Updated last week
- Structural variant caller☆54Updated 2 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆59Updated 3 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆32Updated last year
- Integrate multiple genome assemblies into a pangenome graph☆32Updated 2 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆45Updated 5 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆59Updated 4 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆40Updated last year
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 2 years ago
- An easy way to run BioNano genomic analysis☆27Updated 3 years ago
- Yet another Hi-C scaffolding tool☆19Updated 2 weeks ago
- ☆22Updated 3 years ago
- ☆32Updated 3 years ago
- ☆49Updated last year
- MarginPolish: Graph based assembly polishing☆45Updated 3 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆45Updated 3 years ago
- SV genotyping with long reads☆40Updated last year
- scripts to parse and analyse MCScanX collinearity output☆29Updated 4 years ago
- ☆24Updated last month