MariaNattestad / dotLinks
Dot: An interactive dot plot viewer for comparative genomics
☆34Updated 2 years ago
Alternatives and similar repositories for dot
Users that are interested in dot are comparing it to the libraries listed below
Sorting:
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 4 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆61Updated 5 years ago
- ☆26Updated 5 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆48Updated 5 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- ☆63Updated 2 weeks ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 3 years ago
- A tool for discovering transposable elements and describing patterns of genome evolution☆31Updated 2 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 6 years ago
- ☆31Updated 11 months ago
- Structural variant caller☆54Updated 3 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated 2 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- ☆81Updated 5 months ago
- ☆32Updated 4 years ago
- Visualising discordant reads☆15Updated 9 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated 3 weeks ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆68Updated last month
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.☆36Updated 4 months ago
- Transposable Elements MOvement detection using LOng reads☆22Updated 2 weeks ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- Conditional Reciprocal Best Blast☆41Updated 8 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- ☆42Updated last year
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 6 months ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago