MariaNattestad / dotLinks
Dot: An interactive dot plot viewer for comparative genomics
☆33Updated 2 years ago
Alternatives and similar repositories for dot
Users that are interested in dot are comparing it to the libraries listed below
Sorting:
- ☆30Updated 9 months ago
- Variant annotation and merging pipeline☆34Updated last week
- A Nextflow workflow to generate lift over files for any pair of genomes☆65Updated 2 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆35Updated this week
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆24Updated 3 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆37Updated 11 months ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Miscellaneous scripts for applications of PacBio systems☆27Updated 3 years ago
- Structural variant caller☆54Updated 3 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 6 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆42Updated 7 months ago
- ☆28Updated 2 years ago
- Error correction of ONT transcript reads☆58Updated last year
- ☆80Updated 3 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆37Updated last month
- SV calling for diploid assemblies☆27Updated last year
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- An easy way to run BioNano genomic analysis☆27Updated 4 years ago
- ☆32Updated 4 years ago
- A battery of methylation tools for PacBio HiFi reads☆36Updated 3 months ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago