gringer / bioinfscriptsLinks
Bioinformatics scripts produced over the course of my work. Now maintained on GitLab.
☆69Updated 5 years ago
Alternatives and similar repositories for bioinfscripts
Users that are interested in bioinfscripts are comparing it to the libraries listed below
Sorting:
- genomic alignment similarity search tool☆18Updated 3 months ago
- Transposable element polymorphism identification☆34Updated 5 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆56Updated 2 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated last year
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆51Updated 2 months ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated 2 years ago
- Genome Annotation Without Nightmares☆46Updated 7 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 9 months ago
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆16Updated 7 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…☆38Updated last year
- Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)☆45Updated 5 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
- A statistical framework for ploidy estimation using NGS short-read data☆60Updated 7 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆29Updated 10 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆31Updated 4 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Structural variant caller☆55Updated 3 years ago
- SV genotyping with long reads☆39Updated 2 years ago
- UCSC Nanopore☆43Updated 6 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 4 years ago
- ☆26Updated 6 months ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- ☆81Updated 6 months ago
- A repo contains historical and updated MTEC libraries.☆18Updated 5 years ago