Bioinformatics scripts produced over the course of my work. Now maintained on GitLab.
☆69Sep 7, 2019Updated 6 years ago
Alternatives and similar repositories for bioinfscripts
Users that are interested in bioinfscripts are comparing it to the libraries listed below
Sorting:
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 5 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Sep 5, 2025Updated 5 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Mar 3, 2025Updated 11 months ago
- Set of script for the paper on the cattle graph genome☆13Jan 10, 2023Updated 3 years ago
- parallelLastz: Running Lastz in parallel☆17Sep 13, 2024Updated last year
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Feb 28, 2017Updated 9 years ago
- Westlake BioBank for Chinese pilot project☆10May 17, 2023Updated 2 years ago
- ☆15Aug 6, 2018Updated 7 years ago
- scripts for the project of seven thaliana genomes assembly☆42May 22, 2021Updated 4 years ago
- ☆13Nov 15, 2017Updated 8 years ago
- A utility for splitting mixed origin NGS reads☆10Jun 1, 2021Updated 4 years ago
- ☆16Apr 9, 2021Updated 4 years ago
- Characterization of Structural Variation in Chinese samples☆18Dec 22, 2021Updated 4 years ago
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Jan 17, 2023Updated 3 years ago
- ♥ Efficient Estimation of Evolutionary Distances☆47Feb 15, 2026Updated last week
- A tool for recovering synteny blocks from multiple alignment☆32Oct 18, 2021Updated 4 years ago
- ☆26Aug 10, 2021Updated 4 years ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Mar 26, 2023Updated 2 years ago
- Killifish genomics scripts☆12Feb 19, 2021Updated 5 years ago
- This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomes☆12Aug 31, 2018Updated 7 years ago
- Generate mutated sequence files from a reference genome.☆11Dec 26, 2022Updated 3 years ago
- This is the Haplotypo repository☆22May 24, 2024Updated last year
- Population Reference Graphs for the HLA and MHC.☆35Dec 18, 2018Updated 7 years ago
- ☆12Nov 23, 2020Updated 5 years ago
- Long read to reference genome mapping tool☆13Mar 14, 2024Updated last year
- R package to draw syntenic plots in 3 different styles☆45Feb 2, 2026Updated 3 weeks ago
- k-mer similarity analysis pipeline☆21Nov 20, 2025Updated 3 months ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Jan 11, 2021Updated 5 years ago
- Some useful bioinformatics pipelines for genomics analysis☆14May 25, 2021Updated 4 years ago
- ☆14Feb 22, 2022Updated 4 years ago
- calling SVs from Blasr contig level alignments☆54Mar 9, 2018Updated 7 years ago
- Code and files used in teaching and training courses.☆31Nov 25, 2016Updated 9 years ago
- A tool for discovering transposable elements and describing patterns of genome evolution☆31Apr 23, 2023Updated 2 years ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Oct 11, 2018Updated 7 years ago
- Script to help assessing the evolutionary history of a TE family☆16Sep 5, 2019Updated 6 years ago
- Code repository for the T2T-Y paper☆24Jul 11, 2023Updated 2 years ago
- extract MSAs from genome variation graphs☆34Sep 20, 2020Updated 5 years ago
- Classify sequencing reads using MinHash.☆48Apr 6, 2020Updated 5 years ago
- Tools and software library developed by the ONT Applications group☆64Jan 22, 2021Updated 5 years ago