widdowquinn / TeachingLinks
Code and files used in teaching and training courses.
☆30Updated 9 years ago
Alternatives and similar repositories for Teaching
Users that are interested in Teaching are comparing it to the libraries listed below
Sorting:
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- WGS (Wheat) Robust Assembly Pipeline☆22Updated 4 years ago
- genomic alignment similarity search tool☆18Updated 7 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Scaffolding with assembly likelihood optimization☆21Updated 5 years ago
- A comparative genome scaffolding tool☆16Updated 7 years ago
- ☆26Updated 6 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- This repository is deprecated, please use the link to the right.☆23Updated 7 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated 3 months ago
- Guided synteny alignment between duplicated genomes (within specified quota constraint)☆59Updated 8 years ago
- Visualising discordant reads☆15Updated 10 years ago
- ☆21Updated 6 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 7 months ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 5 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆39Updated 2 months ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 8 years ago
- Tool for visualising assemblies.☆17Updated 10 years ago
- Haplotype-aware genome assembly toolkit☆30Updated 5 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆23Updated 3 years ago
- Hagfish - assess an assembly through creative use of coverage plots☆36Updated 13 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 7 years ago
- ♥ Efficient Estimation of Evolutionary Distances☆47Updated last year
- scripts to parse and analyse MCScanX collinearity output☆33Updated 5 years ago