Genome Annotation Pipeline
☆43Aug 20, 2024Updated last year
Alternatives and similar repositories for maker
Users that are interested in maker are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Construct ab initio gene prediction using only BUSCO augustus models. Add in transcriptome for extra support☆22Sep 13, 2023Updated 2 years ago
- ☆15Aug 6, 2018Updated 7 years ago
- Simple tools for working with Hi-C data☆18Dec 19, 2018Updated 7 years ago
- Figures for the CHM13 T2T SD paper.☆11Sep 12, 2021Updated 4 years ago
- Whole Genome Annotation Pipeline☆16Jun 20, 2025Updated 9 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Feb 28, 2017Updated 9 years ago
- Gene prediction software☆67Oct 22, 2022Updated 3 years ago
- A fork of exonerate: a generic tool for sequence alignment☆71Nov 30, 2023Updated 2 years ago
- Plant genome assembly and annotation pipeline using snakemake☆53May 14, 2025Updated 10 months ago
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated last year
- Genome alignment and synteny plots☆34Mar 24, 2026Updated 2 weeks ago
- Codes for Vmap1.1 and Vmap3☆11Jan 5, 2026Updated 3 months ago
- Accurate haplotype construction and detection of selection signatures enabled by 889 high quality pig genome sequences☆13May 11, 2023Updated 2 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- Estimating gene family turnover rates by likelihood-based methods☆12Aug 17, 2020Updated 5 years ago
- Pipelines for Drosophila genome assembly and analysis☆16May 15, 2022Updated 3 years ago
- High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.☆67Aug 16, 2023Updated 2 years ago
- TSEBRA: Transcript Selector for BRAKER☆49Updated this week
- A genome assembly assessment pipeline.☆38Nov 20, 2023Updated 2 years ago
- ☆13Nov 15, 2017Updated 8 years ago
- ☆17Nov 26, 2023Updated 2 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Dec 6, 2018Updated 7 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆44May 8, 2024Updated last year
- ☆30Mar 4, 2022Updated 4 years ago
- A tool for evaluating long-read de novo assembly results☆53Aug 25, 2024Updated last year
- Standard operating procedures for H3ABionet data processing and analyses☆11Aug 30, 2021Updated 4 years ago
- source code for EVM☆123Nov 29, 2024Updated last year
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Mar 26, 2023Updated 3 years ago
- Some useful bioinformatics pipelines for genomics analysis☆14May 25, 2021Updated 4 years ago
- A tool for discovering transposable elements and describing patterns of genome evolution☆31Apr 23, 2023Updated 2 years ago
- OpenGL Powered Pretext Contact Map Viewer☆57Mar 30, 2026Updated last week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆12Sep 6, 2019Updated 6 years ago
- Study of TE evolution in a population of genomes☆10Dec 11, 2023Updated 2 years ago
- Structure variants calling and genotyping scripts for pan-Zea☆22Nov 17, 2022Updated 3 years ago
- The complete sequence of a Chinese individual☆12Oct 8, 2024Updated last year
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 5 months ago
- ☆13Jan 20, 2026Updated 2 months ago
- Eukaryotic Genome Annotation Pipeline☆383Feb 12, 2026Updated last month