Yandell-Lab / makerLinks
Genome Annotation Pipeline
☆36Updated 10 months ago
Alternatives and similar repositories for maker
Users that are interested in maker are comparing it to the libraries listed below
Sorting:
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆34Updated 4 months ago
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- ☆40Updated 2 years ago
- Plant genome assembly and annotation pipeline using snakemake☆44Updated last month
- ☆30Updated 5 months ago
- ☆28Updated last year
- Robust identification of orthologous Synteny with the Orthology Index☆21Updated last week
- A genome assembly assessment pipeline.☆37Updated last year
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆30Updated 5 months ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆45Updated 3 weeks ago
- Multi-genome synteny block visualization tool☆42Updated 5 months ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆36Updated last week
- Convergent substitution detection tool based on the PCOC model☆31Updated 3 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆41Updated 9 months ago
- Centromics: visualing centromeres with multiple omics data☆18Updated last year
- ☆35Updated 7 months ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆33Updated 8 months ago
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆35Updated 2 years ago
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆19Updated 5 years ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- Chromosome-level synteny plotting using orthologous regions☆29Updated 9 months ago
- A tool for evaluating long-read de novo assembly results☆36Updated 10 months ago
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆18Updated last year
- A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitoch…☆27Updated last month
- Dinoflagellate Annotation Workflow☆14Updated 2 years ago
- Analyses pipelines that I use for my work☆12Updated 3 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated last year