Yandell-Lab / makerLinks
Genome Annotation Pipeline
☆36Updated last year
Alternatives and similar repositories for maker
Users that are interested in maker are comparing it to the libraries listed below
Sorting:
- A genome assembly assessment pipeline.☆37Updated last year
- Plant genome assembly and annotation pipeline using snakemake☆46Updated 3 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 6 months ago
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- ☆40Updated 2 years ago
- Convergent substitution detection tool based on the PCOC model☆31Updated 3 years ago
- Multi-genome synteny block visualization tool☆43Updated 7 months ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆19Updated 5 years ago
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆20Updated last year
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆34Updated 10 months ago
- ☆41Updated 2 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆37Updated 2 years ago
- ☆21Updated last year
- ☆28Updated 3 years ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆31Updated 7 months ago
- ☆24Updated last year
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- ☆32Updated 4 years ago
- ☆28Updated last year
- ☆31Updated 5 months ago
- Centromics: visualing centromeres with multiple omics data☆19Updated last year
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆29Updated 2 months ago
- ☆30Updated 7 months ago
- Robust identification of orthologous Synteny with the Orthology Index☆29Updated this week
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆39Updated this week
- Dynamic Elongation of a Genome Assembly Path☆22Updated last year