sestaton / tephra
A tool for discovering transposable elements and describing patterns of genome evolution
☆30Updated last year
Related projects ⓘ
Alternatives and complementary repositories for tephra
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- Improved Phased Assembler☆28Updated 2 years ago
- calling SVs from Blasr contig level alignments☆53Updated 6 years ago
- ☆32Updated 3 years ago
- assembly evaluation tool☆34Updated 2 years ago
- ☆31Updated 4 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆32Updated last year
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆33Updated 2 years ago
- ☆24Updated 2 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆45Updated 3 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated last week
- methods for orphan gene prediction paper optimization☆25Updated 2 years ago
- Python wrappers for programs that search for transposable elements☆19Updated 8 years ago
- ☆30Updated 2 weeks ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- Genome Annotation Pipeline☆32Updated 3 months ago
- TGS scaffolding☆45Updated 3 years ago
- Likelihood-based Selective Sweep Detection☆35Updated last year
- Transposable element polymorphism identification☆32Updated 4 years ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆64Updated last month
- An easy way to run BioNano genomic analysis☆27Updated 3 years ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆33Updated 6 years ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- ☆16Updated 2 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated last year
- Integrate multiple genome assemblies into a pangenome graph☆32Updated 2 years ago
- Variant annotation and merging pipeline☆29Updated 3 weeks ago
- ☆28Updated 2 months ago