sestaton / tephraLinks
A tool for discovering transposable elements and describing patterns of genome evolution
☆31Updated 2 years ago
Alternatives and similar repositories for tephra
Users that are interested in tephra are comparing it to the libraries listed below
Sorting:
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Updated 2 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- ☆27Updated 11 months ago
- ☆35Updated 5 years ago
- ☆44Updated last year
- ☆31Updated 6 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆36Updated 3 years ago
- Computational Analysis of Gene Expression Evolution☆45Updated 5 months ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 6 years ago
- ☆32Updated last year
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- R-package: Calculation of haplotype blocks and libraries☆35Updated 6 months ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆37Updated 2 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆37Updated last year
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆13Updated 6 years ago
- Toolkit for evolutionary analyses of linkage groups☆33Updated last year
- read and analyse RepeatMasker output☆27Updated 2 years ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- TGS scaffolding☆47Updated 4 years ago
- methods for orphan gene prediction paper optimization☆25Updated 4 years ago
- Convergent substitution detection tool based on the PCOC model☆31Updated 4 years ago
- ☆33Updated last year
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆24Updated 5 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆30Updated 4 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Updated 4 years ago
- Code for phasing SVs with SNPs☆54Updated 5 years ago
- Chromosome-level synteny plotting using orthologous regions☆31Updated last year
- This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.☆45Updated 2 years ago