sestaton / tephraLinks
A tool for discovering transposable elements and describing patterns of genome evolution
☆31Updated 2 years ago
Alternatives and similar repositories for tephra
Users that are interested in tephra are comparing it to the libraries listed below
Sorting:
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Updated 2 years ago
- ☆31Updated 6 years ago
- ☆44Updated last year
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- ☆35Updated 5 years ago
- methods for orphan gene prediction paper optimization☆25Updated 4 years ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 6 years ago
- ☆26Updated 11 months ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆30Updated 4 months ago
- A shiny application to visualize MCscan result☆38Updated 3 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆36Updated 3 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- scripts to parse and analyse MCScanX collinearity output☆33Updated 5 years ago
- ☆32Updated last year
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆37Updated last year
- Improved Phased Assembler☆28Updated 3 years ago
- This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.☆46Updated 2 years ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆37Updated 2 years ago
- Tools and Utilities for msmc and msmc2☆50Updated last week
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- read and analyse RepeatMasker output☆27Updated 2 years ago
- scripts for the project of seven thaliana genomes assembly☆42Updated 4 years ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- Toolkit for evolutionary analyses of linkage groups☆33Updated last year
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆50Updated 2 months ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- Transposable element polymorphism identification☆34Updated 5 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Updated 4 years ago
- Multi-genome synteny block visualization tool☆52Updated 3 weeks ago