moshi4 / pyGenomeVizLinks
A genome visualization python package for comparative genomics
☆345Updated 2 months ago
Alternatives and similar repositories for pyGenomeViz
Users that are interested in pyGenomeViz are comparing it to the libraries listed below
Sorting:
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆532Updated last week
- Eukaryotic Genome Annotation Pipeline☆356Updated last week
- Tool to plot synteny and structural rearrangements between genomes☆311Updated 3 months ago
- Align proteins to genomes with splicing and frameshift☆375Updated this week
- Synteny and Rearrangement Identifier☆396Updated 2 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆325Updated last year
- Build a partitioned pangenome graph from microbial genomes☆271Updated last week
- ☆256Updated last year
- A flexible pipeline for complete analysis of bacterial genomes☆464Updated last month
- Rapid comparison and dereplication of genomes☆302Updated last month
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆428Updated 2 months ago
- SortMeRNA: next-generation sequence filtering and alignment tool☆270Updated 6 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆288Updated last week
- IQ-TREE software version 2: phylogenetics by maximum likelihood☆292Updated 2 months ago
- Gene cluster comparison figure generator☆590Updated 7 months ago
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆351Updated 3 weeks ago
- NCBI Prokaryotic Genome Annotation Pipeline☆342Updated last month
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆345Updated last year
- An updated pipeline for pangenome investigation☆306Updated 4 months ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆260Updated 7 months ago
- adapter trimmer for Oxford Nanopore reads☆365Updated last year
- A complete pipeline for metagenomic analysis☆421Updated last week
- the pangenome graph builder☆439Updated last month
- bioBakery tools for meta'omic profiling☆283Updated last month
- Rapid large-scale prokaryote pan genome analysis☆354Updated 3 years ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆416Updated 5 months ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆376Updated last month
- Genome annotation with AUGUSTUS☆310Updated last week
- An accurate GFF3/GTF lift over pipeline☆490Updated last year
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆242Updated 11 months ago