A genome visualization python package for comparative genomics
☆425Jun 14, 2026Updated 3 months ago
Alternatives and similar repositories for pyGenomeViz
Users that are interested in pyGenomeViz are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Gene cluster comparison figure generator☆655Dec 22, 2025Updated 9 months ago
- Bioinformatics tool for Locus Visualisation☆171Mar 30, 2026Updated 5 months ago
- Synteny and Rearrangement Identifier☆490Jul 1, 2026Updated 2 months ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆95May 3, 2025Updated last year
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆681Aug 7, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆85May 3, 2025Updated last year
- Reorients assembled microbial sequences☆146Jun 30, 2026Updated 2 months ago
- An R package designed for drawing gene arrow maps☆101Sep 29, 2025Updated 11 months ago
- Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)☆1,122Jun 14, 2026Updated 3 months ago
- Detecting multi-genome synteny using minimizer graph mapping☆116Updated this week
- Tool to plot synteny and structural rearrangements between genomes☆356Jul 27, 2026Updated last month
- A grammar of graphics for comparative genomics☆782Sep 2, 2026Updated 3 weeks ago
- SRF: Satellite Repeat Finder☆109Jan 8, 2024Updated 2 years ago
- Pharokka is a rapid standardised annotation tool for bacteriophage genomes and metagenomes.☆231Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆110Dec 11, 2023Updated 2 years ago
- Simple phylogenetic tree visualization python package for phylogenetic analysis☆66Sep 14, 2024Updated 2 years ago
- Phage Annotation using Protein Structures☆175Updated this week
- oxford dot plots☆174Updated this week
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆200Dec 1, 2024Updated last year
- Tools for fast and flexible genome assembly scaffolding and improvement☆576Feb 14, 2024Updated 2 years ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆110Jun 25, 2023Updated 3 years ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆264May 13, 2026Updated 4 months ago
- Create a tree using Mash distances☆190Oct 24, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Easy-to-use web application for visualization and comparison of genomes in Genbank file☆22May 27, 2022Updated 4 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆66Jun 16, 2025Updated last year
- A list of interesting genome browser and genome visualization programs☆1,107Jul 21, 2026Updated 2 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆239Updated this week
- Build a partitioned pangenome graph from microbial genomes☆313Updated this week
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆90Sep 9, 2026Updated 2 weeks ago
- An updated pipeline for pangenome investigation☆377Jul 2, 2026Updated 2 months ago
- Follow up to Grace Blackwell's 661k dataset, for 2023☆156Jun 10, 2026Updated 3 months ago
- geNomad: Identification of mobile genetic elements☆334Mar 29, 2026Updated 5 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆39Feb 1, 2023Updated 3 years ago
- A genome completeness evaluation tool based on miniprot☆267Aug 17, 2026Updated last month
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆110Jan 22, 2026Updated 8 months ago
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆227Sep 15, 2026Updated last week
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆101Mar 12, 2026Updated 6 months ago
- the pangenome graph builder☆515Jul 24, 2026Updated last month
- An accurate GFF3/GTF lift over pipeline☆557Aug 1, 2023Updated 3 years ago