π the Great Automatic Nomenclator β The Next Million Names for Archaea and Bacteria
β42Oct 28, 2025Updated 9 months ago
Alternatives and similar repositories for gan
Users that are interested in gan are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Extremely accurate algorithm used to group DNA sequences from microbial communities into operational taxonomic units (proxy for species) β¦β14Nov 20, 2018Updated 7 years ago
- Amalgamated likelihood estimation (ALE) is a probabilistic approach to exhaustively explore all reconciled gene trees that can be amalgamβ¦β55May 14, 2025Updated last year
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insightsβ18Nov 24, 2025Updated 8 months ago
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagationβ31May 25, 2021Updated 5 years ago
- Amplicon sequencing variants from 16s ONT R10.4 / HiFi long readsβ51Aug 3, 2026Updated last week
- Managed Database hosting by DigitalOcean β’ AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Assessing the quality of metagenome-derived genome bins using machine learningβ275Mar 20, 2025Updated last year
- Protocol for finding informative protein families and then using them to score omic samplesβ19Jul 27, 2022Updated 4 years ago
- GEne Cluster prediction with COnditional random fields.β87Jul 29, 2026Updated 2 weeks ago
- Python package for compositional data analysisβ14Dec 1, 2023Updated 2 years ago
- A new high-resolution long-read metagenome assembler for even noisy readsβ163Jul 3, 2026Updated last month
- Methods to determine sequence element (unitig) presence/absenceβ27Mar 6, 2026Updated 5 months ago
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.β54Jul 10, 2026Updated last month
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)β72Jul 16, 2026Updated 3 weeks ago
- Find Co-Abundant Groups of Genesβ12Aug 3, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer β’ AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Estimate node ages of a phylogeny by approximating the phylogenetic likelihood with a multivariate normal distribution.β12Jun 23, 2025Updated last year
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.β260May 13, 2026Updated 3 months ago
- Query sequence database by HMMs arranged in predefined synteny structureβ20Jun 23, 2026Updated last month
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.β182Jul 22, 2026Updated 3 weeks ago
- Bioinformatic Tools for study Evolution of metabolic diversityβ42Feb 27, 2024Updated 2 years ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmidsβ665Updated this week
- Graph-based assembly phasingβ99Nov 25, 2025Updated 8 months ago
- β19Dec 7, 2020Updated 5 years ago
- LexicMap: efficient sequence alignment against millions of prokaryotic genomesβ224Updated this week
- Managed Kubernetes at scale on DigitalOcean β’ AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Bacterial taxonomy construction and evaluation in Rβ16Jan 30, 2024Updated 2 years ago
- EcoliTyper: A species-optimized computational pipeline for comprehensive genotyping and surveillance of Escherichia coli. Perfect for cliβ¦β28Updated this week
- Identify and remove contaminants from metagenome-assembled genomesβ18Feb 16, 2024Updated 2 years ago
- Similarity networks of biosynthetic gene clustersβ180Apr 1, 2026Updated 4 months ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomesβ55Oct 24, 2025Updated 9 months ago
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.β29Aug 3, 2026Updated last week
- Convert GTDB taxonomy to NCBI taxdump formatβ78Aug 24, 2023Updated 2 years ago
- Pipeline for analysing intergenic regions in bacteriaβ39Oct 25, 2019Updated 6 years ago
- Phage-Host Interaction Search Toolβ33Jul 8, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer β’ AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A hybrid assembly and MAG recovery pipeline (and more!)β116Aug 5, 2026Updated last week
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!β189Mar 17, 2026Updated 4 months ago
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.β18Updated this week
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5β91Mar 12, 2026Updated 5 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigsβ30Jun 13, 2023Updated 3 years ago
- β22Sep 4, 2024Updated last year
- PiGx SARS-CoV-2 wastewater sequencing pipelineβ18May 3, 2023Updated 3 years ago