π the Great Automatic Nomenclator β The Next Million Names for Archaea and Bacteria
β42Oct 28, 2025Updated 11 months ago
Alternatives and similar repositories for gan
Users that are interested in gan are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Extremely accurate algorithm used to group DNA sequences from microbial communities into operational taxonomic units (proxy for species) β¦β14Nov 20, 2018Updated 7 years ago
- Amalgamated likelihood estimation (ALE) is a probabilistic approach to exhaustively explore all reconciled gene trees that can be amalgamβ¦β55May 14, 2025Updated last year
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insightsβ17Nov 24, 2025Updated 10 months ago
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagationβ31May 25, 2021Updated 5 years ago
- Amplicon sequencing variants from modern nanopore / HiFi long read ampliconsβ65Updated this week
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Assessing the quality of metagenome-derived genome bins using machine learningβ280Mar 20, 2025Updated last year
- GEne Cluster prediction with COnditional random fields.β90Jul 29, 2026Updated 2 months ago
- Protocol for finding informative protein families and then using them to score omic samplesβ19Jul 27, 2022Updated 4 years ago
- Python package for compositional data analysisβ15Dec 1, 2023Updated 2 years ago
- A high-resolution long-read metagenome assembler for even noisy reads. Myloasm assembles strain-resolved, circular + complete genomes froβ¦β173Updated this week
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.β56Sep 28, 2026Updated 2 weeks ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)β72Aug 27, 2026Updated last month
- Find Co-Abundant Groups of Genesβ12Aug 3, 2020Updated 6 years ago
- Methods to determine sequence element (unitig) presence/absenceβ28Mar 6, 2026Updated 7 months ago
- Managed Database hosting by DigitalOcean β’ AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Estimate node ages of a phylogeny by approximating the phylogenetic likelihood with a multivariate normal distribution.β12Jun 23, 2025Updated last year
- Fast average nucleotide identity (ANI) calculator for bacterial genomes, MAGs, and contigs. Supports genome comparisons and large-scale dβ¦β265Updated this week
- Query sequence database by HMMs arranged in predefined synteny structureβ21Jun 23, 2026Updated 3 months ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.β186Sep 9, 2026Updated last month
- Bioinformatic Tools for study Evolution of metabolic diversityβ42Feb 27, 2024Updated 2 years ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmidsβ685Updated this week
- Graph-based assembly phasingβ102Nov 25, 2025Updated 10 months ago
- β20Dec 7, 2020Updated 5 years ago
- LexicMap: efficient sequence alignment against millions of prokaryotic genomesβ226Updated this week
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Bacterial taxonomy construction and evaluation in Rβ16Jan 30, 2024Updated 2 years ago
- EcoliTyper: A species-optimized computational pipeline for comprehensive genotyping and surveillance of Escherichia coli. Perfect for cliβ¦β29Aug 9, 2026Updated 2 months ago
- Identify and remove contaminants from metagenome-assembled genomesβ18Feb 16, 2024Updated 2 years ago
- Similarity networks of biosynthetic gene clustersβ178Oct 5, 2026Updated last week
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomesβ56Sep 1, 2026Updated last month
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.β29Aug 3, 2026Updated 2 months ago
- Convert GTDB taxonomy to NCBI taxdump formatβ78Aug 24, 2023Updated 3 years ago
- Pipeline for analysing intergenic regions in bacteriaβ39Oct 25, 2019Updated 6 years ago
- Phage-Host Interaction Search Toolβ33Sep 10, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A hybrid assembly and MAG recovery pipeline (and more!)β120Updated this week
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!β188Mar 17, 2026Updated 6 months ago
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.β20Aug 7, 2026Updated 2 months ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5β101Mar 12, 2026Updated 7 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigsβ28Jun 13, 2023Updated 3 years ago
- β22Sep 4, 2024Updated 2 years ago
- PiGx SARS-CoV-2 wastewater sequencing pipelineβ18May 3, 2023Updated 3 years ago