π the Great Automatic Nomenclator β The Next Million Names for Archaea and Bacteria
β41Oct 28, 2025Updated 6 months ago
Alternatives and similar repositories for gan
Users that are interested in gan are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Extremely accurate algorithm used to group DNA sequences from microbial communities into operational taxonomic units (proxy for species) β¦β14Nov 20, 2018Updated 7 years ago
- Amalgamated likelihood estimation (ALE) is a probabilistic approach to exhaustively explore all reconciled gene trees that can be amalgamβ¦β54May 14, 2025Updated 11 months ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insightsβ18Nov 24, 2025Updated 5 months ago
- Methods to determine sequence element (unitig) presence/absenceβ24Mar 6, 2026Updated last month
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagationβ31May 25, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Assessing the quality of metagenome-derived genome bins using machine learningβ257Mar 20, 2025Updated last year
- Protocol for finding informative protein families and then using them to score omic samplesβ19Jul 27, 2022Updated 3 years ago
- GEne Cluster prediction with COnditional random fields.β84Mar 10, 2026Updated last month
- Python package for compositional data analysisβ14Dec 1, 2023Updated 2 years ago
- Find Co-Abundant Groups of Genesβ12Aug 3, 2020Updated 5 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)β71Mar 9, 2026Updated last month
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.β49Feb 5, 2026Updated 2 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.β249Oct 12, 2025Updated 6 months ago
- Estimate node ages of a phylogeny by approximating the phylogenetic likelihood with a multivariate normal distribution.β12Jun 23, 2025Updated 10 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer β’ AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- This is a repository for CAMPER.β17Mar 18, 2024Updated 2 years ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.β174Apr 6, 2026Updated 3 weeks ago
- Bitpacked sequence trait and implementationβ18Feb 27, 2026Updated 2 months ago
- Bioinformatic Tools for study Evolution of metabolic diversityβ41Feb 27, 2024Updated 2 years ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmidsβ636Feb 18, 2026Updated 2 months ago
- β19Dec 7, 2020Updated 5 years ago
- Graph-based assembly phasingβ94Nov 25, 2025Updated 5 months ago
- A new high-resolution long-read metagenome assembler for even noisy readsβ146Apr 5, 2026Updated 3 weeks ago
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomesβ22Apr 27, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI β’ AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Bacterial taxonomy construction and evaluation in Rβ16Jan 30, 2024Updated 2 years ago
- Identify and remove contaminants from metagenome-assembled genomesβ18Feb 16, 2024Updated 2 years ago
- Pipeline for analysing intergenic regions in bacteriaβ39Oct 25, 2019Updated 6 years ago
- Convert GTDB taxonomy to NCBI taxdump formatβ74Aug 24, 2023Updated 2 years ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!β184Mar 17, 2026Updated last month
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomesβ54Oct 24, 2025Updated 6 months ago
- A hybrid assembly and MAG recovery pipeline (and more!)β106Updated this week
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.β28Apr 28, 2025Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigsβ30Jun 13, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Phage-Host Interaction Search Toolβ30Jul 8, 2024Updated last year
- Improvement of metagenome-assembled genomesβ58Mar 17, 2020Updated 6 years ago
- PiGx SARS-CoV-2 wastewater sequencing pipelineβ18May 3, 2023Updated 3 years ago
- π¦ π§¬π§βπ»π Microbial genomes-to-report pipelineβ74Mar 14, 2026Updated last month
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.β213Mar 3, 2026Updated 2 months ago
- Python package for detection of chimerism and contamination in prokaryotic genomes.β90Mar 12, 2026Updated last month
- Predict prokaryotic hosts for phage (meta) genomic sequencesβ11Apr 4, 2022Updated 4 years ago