π the Great Automatic Nomenclator β The Next Million Names for Archaea and Bacteria
β41Oct 28, 2025Updated 6 months ago
Alternatives and similar repositories for gan
Users that are interested in gan are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Extremely accurate algorithm used to group DNA sequences from microbial communities into operational taxonomic units (proxy for species) β¦β14Nov 20, 2018Updated 7 years ago
- Amalgamated likelihood estimation (ALE) is a probabilistic approach to exhaustively explore all reconciled gene trees that can be amalgamβ¦β54May 14, 2025Updated last year
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insightsβ18Nov 24, 2025Updated 6 months ago
- Methods to determine sequence element (unitig) presence/absenceβ24Mar 6, 2026Updated 2 months ago
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagationβ31May 25, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Assessing the quality of metagenome-derived genome bins using machine learningβ263Mar 20, 2025Updated last year
- Protocol for finding informative protein families and then using them to score omic samplesβ19Jul 27, 2022Updated 3 years ago
- GEne Cluster prediction with COnditional random fields.β84Mar 10, 2026Updated 2 months ago
- Python package for compositional data analysisβ14Dec 1, 2023Updated 2 years ago
- Find Co-Abundant Groups of Genesβ12Aug 3, 2020Updated 5 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)β71Updated this week
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.β50Feb 5, 2026Updated 3 months ago
- Estimate node ages of a phylogeny by approximating the phylogenetic likelihood with a multivariate normal distribution.β12Jun 23, 2025Updated 11 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.β250May 13, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI β’ AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- This is a repository for CAMPER.β17Mar 18, 2024Updated 2 years ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.β177Apr 6, 2026Updated last month
- Bitpacked sequence trait and implementationβ18Feb 27, 2026Updated 2 months ago
- Bioinformatic Tools for study Evolution of metabolic diversityβ41Feb 27, 2024Updated 2 years ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmidsβ642May 15, 2026Updated last week
- β19Dec 7, 2020Updated 5 years ago
- Graph-based assembly phasingβ94Nov 25, 2025Updated 5 months ago
- A new high-resolution long-read metagenome assembler for even noisy readsβ148Apr 5, 2026Updated last month
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomesβ22Apr 27, 2026Updated 3 weeks ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits β’ AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Bacterial taxonomy construction and evaluation in Rβ16Jan 30, 2024Updated 2 years ago
- Identify and remove contaminants from metagenome-assembled genomesβ18Feb 16, 2024Updated 2 years ago
- Pipeline for analysing intergenic regions in bacteriaβ39Oct 25, 2019Updated 6 years ago
- Convert GTDB taxonomy to NCBI taxdump formatβ75Aug 24, 2023Updated 2 years ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!β187Mar 17, 2026Updated 2 months ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomesβ55Oct 24, 2025Updated 7 months ago
- A hybrid assembly and MAG recovery pipeline (and more!)β107May 6, 2026Updated 2 weeks ago
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.β28Apr 28, 2025Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigsβ30Jun 13, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- PiGx SARS-CoV-2 wastewater sequencing pipelineβ18May 3, 2023Updated 3 years ago
- Phage-Host Interaction Search Toolβ30Jul 8, 2024Updated last year
- Improvement of metagenome-assembled genomesβ58Mar 17, 2020Updated 6 years ago
- π¦ π§¬π§βπ»π Microbial genomes-to-report pipelineβ74Mar 14, 2026Updated 2 months ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.β215May 9, 2026Updated 2 weeks ago
- Python package for detection of chimerism and contamination in prokaryotic genomes.β91May 11, 2026Updated last week
- Predict prokaryotic hosts for phage (meta) genomic sequencesβ11Apr 4, 2022Updated 4 years ago