π the Great Automatic Nomenclator β The Next Million Names for Archaea and Bacteria
β42Oct 28, 2025Updated 10 months ago
Alternatives and similar repositories for gan
Users that are interested in gan are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Extremely accurate algorithm used to group DNA sequences from microbial communities into operational taxonomic units (proxy for species) β¦β14Nov 20, 2018Updated 7 years ago
- Amalgamated likelihood estimation (ALE) is a probabilistic approach to exhaustively explore all reconciled gene trees that can be amalgamβ¦β55May 14, 2025Updated last year
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insightsβ17Nov 24, 2025Updated 9 months ago
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagationβ31May 25, 2021Updated 5 years ago
- Amplicon sequencing variants from 16s ONT R10.4 / HiFi long readsβ54Updated this week
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Assessing the quality of metagenome-derived genome bins using machine learningβ276Mar 20, 2025Updated last year
- Protocol for finding informative protein families and then using them to score omic samplesβ19Jul 27, 2022Updated 4 years ago
- GEne Cluster prediction with COnditional random fields.β87Jul 29, 2026Updated last month
- Python package for compositional data analysisβ15Dec 1, 2023Updated 2 years ago
- A new high-resolution long-read metagenome assembler for even noisy readsβ167Jul 3, 2026Updated 2 months ago
- Methods to determine sequence element (unitig) presence/absenceβ27Mar 6, 2026Updated 5 months ago
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.β55Jul 10, 2026Updated last month
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)β72Aug 27, 2026Updated last week
- Find Co-Abundant Groups of Genesβ12Aug 3, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer β’ AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Estimate node ages of a phylogeny by approximating the phylogenetic likelihood with a multivariate normal distribution.β12Jun 23, 2025Updated last year
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.β263May 13, 2026Updated 3 months ago
- Query sequence database by HMMs arranged in predefined synteny structureβ20Jun 23, 2026Updated 2 months ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.β182Jul 22, 2026Updated last month
- Bioinformatic Tools for study Evolution of metabolic diversityβ42Feb 27, 2024Updated 2 years ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmidsβ671Aug 7, 2026Updated 3 weeks ago
- Graph-based assembly phasingβ102Nov 25, 2025Updated 9 months ago
- β20Dec 7, 2020Updated 5 years ago
- LexicMap: efficient sequence alignment against millions of prokaryotic genomesβ226Aug 22, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI β’ AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Bacterial taxonomy construction and evaluation in Rβ16Jan 30, 2024Updated 2 years ago
- EcoliTyper: A species-optimized computational pipeline for comprehensive genotyping and surveillance of Escherichia coli. Perfect for cliβ¦β29Aug 9, 2026Updated 3 weeks ago
- Identify and remove contaminants from metagenome-assembled genomesβ18Feb 16, 2024Updated 2 years ago
- Similarity networks of biosynthetic gene clustersβ179Apr 1, 2026Updated 5 months ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomesβ55Updated this week
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.β29Aug 3, 2026Updated 3 weeks ago
- Convert GTDB taxonomy to NCBI taxdump formatβ78Aug 24, 2023Updated 3 years ago
- Pipeline for analysing intergenic regions in bacteriaβ39Oct 25, 2019Updated 6 years ago
- Phage-Host Interaction Search Toolβ33Jul 8, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI β’ AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A hybrid assembly and MAG recovery pipeline (and more!)β118Updated this week
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!β190Mar 17, 2026Updated 5 months ago
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.β18Aug 7, 2026Updated 3 weeks ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5β91Mar 12, 2026Updated 5 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigsβ30Jun 13, 2023Updated 3 years ago
- β22Sep 4, 2024Updated last year
- PiGx SARS-CoV-2 wastewater sequencing pipelineβ18May 3, 2023Updated 3 years ago