Alternatives and similar repositories for composition_stats

Users that are interested in composition_stats are comparing it to the libraries listed below

• Zsailer / phylopandas
  Pandas DataFrames for phylogenetics
  ☆75Updated 4 years ago
• biosustain / croissance
  Tool for estimating growth rates from microbial growth curves
  ☆31Updated this week
• qLSLab / GPRuler
  GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…
  ☆11Updated 3 years ago
• ginkgobioworks / geckopy
  Enzyme-constrained genome-scale models in python
  ☆34Updated 2 years ago
• althonos / pytrimal
  Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!
  ☆27Updated 2 months ago
• althonos / pyfamsa
  Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
  ☆37Updated last month
• jwillis0720 / sadie
  The Complete Python Antibody Library
  ☆24Updated last week
• apcamargo / pydustmasker
  Python library for identification and masking of low-complexity regions in nucleotide sequences
  ☆10Updated 2 weeks ago
• Benjamin-Lee / CodonAdaptationIndex
  Python Implementation of Codon Adaption Index
  ☆37Updated 3 years ago
• Edinburgh-Genome-Foundry / python_codon_tables
  Codon usage tables in code-friendly format + Python bindings
  ☆42Updated 8 months ago
• jbloomlab / SARS2_RBD_Ab_escape_maps
  ☆16Updated 2 years ago
• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆48Updated last month
• allie-walker / Natural-product-function
  scripts for predicting natural product activity from biosynthetic gene cluster sequences
  ☆24Updated 4 months ago
• EPFL-LCSB / pytfa
  A Python 3 implementation of Thermodynamics-based Flux Analysis
  ☆43Updated 6 months ago
• Protein-Sequence-Annotation / PSALM
  Protein Sequence Annotation with Language Models
  ☆27Updated 2 weeks ago
• pstjohn / d3flux
  D3.js based visualizations of cobrapy metabolic models
  ☆50Updated 5 years ago
• biosustain / Maud
  Enzyme models that take into account kinetics, allostery and thermodynamics
  ☆27Updated last year
• BioSystemsUM / MEWpy
  Metabolic Engineering Workbench
  ☆41Updated last year
• scikit-bio / scikit-bio-tutorials
  Interactive tutorials for using scikit-bio in biological research
  ☆62Updated 5 months ago
• ecocyc / PythonCyc
  ☆24Updated last year
• usnistgov / lantern
  Interpretable genotype-phenotype landscape modeling
  ☆36Updated 2 years ago
• althonos / lightmotif
  A lightweight platform-accelerated library for biological motif scanning using position weight matrices.
  ☆61Updated 2 months ago
• Global-Biofoundries-Alliance / SynBioPython
  General low-level API
  ☆50Updated 3 years ago
• harmslab / epistasis
  A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.
  ☆37Updated 2 years ago
• apcamargo / RNAsamba
  A tool for computing the coding potential of RNA transcript sequences using deep learning classification model
  ☆57Updated 3 years ago
• gamcil / synthaser
  Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases
  ☆24Updated 3 years ago
• macwiatrak / Bacformer
  Modeling whole bacterial genome as a sequence of proteins.
  ☆86Updated 2 weeks ago
• widdowquinn / 2018-03-06-ibioic
  Teaching materials for 6-7th March 2018 delivery of introductory bioinformatics training course for IBioIC.
  ☆20Updated 7 years ago
• moshi4 / phyTreeViz
  Simple phylogenetic tree visualization python package for phylogenetic analysis
  ☆65Updated last year
• PNNL-CompBio / Snekmer
  Pipeline to apply encoded Kmer analysis to protein sequences
  ☆16Updated this week