Alternatives and similar repositories for composition_stats

Users that are interested in composition_stats are comparing it to the libraries listed below

• Zsailer / phylopandas
  Pandas DataFrames for phylogenetics
  ☆73Updated 4 years ago
• ginkgobioworks / geckopy
  Enzyme-constrained genome-scale models in python
  ☆28Updated last year
• althonos / pytrimal
  Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!
  ☆26Updated 2 months ago
• scikit-bio / scikit-bio-tutorials
  Interactive tutorials for using scikit-bio in biological research
  ☆25Updated this week
• biosustain / croissance
  Tool for estimating growth rates from microbial growth curves
  ☆31Updated 3 years ago
• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆42Updated 4 months ago
• qLSLab / GPRuler
  GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…
  ☆11Updated 2 years ago
• EPFL-LCSB / pytfa
  A Python 3 implementation of Thermodynamics-based Flux Analysis
  ☆39Updated last week
• dbikard / genomenotebook
  A genome browser in your Jupyter notebook
  ☆31Updated 2 months ago
• althonos / pyfamsa
  Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
  ☆32Updated last month
• JKoblitz / bacdive-api
  ☆19Updated 8 months ago
• mgbckr / corals-lib-python
  ☆14Updated 11 months ago
• de-Boer-Lab / hashFrag
  A command-line tool to mitigate homology-based data leakage in sequence-to-expression models
  ☆14Updated last week
• ecocyc / PythonCyc
  ☆24Updated 9 months ago
• Global-Biofoundries-Alliance / SynBioPython
  General low-level API
  ☆50Updated 3 years ago
• pstjohn / d3flux
  D3.js based visualizations of cobrapy metabolic models
  ☆45Updated 5 years ago
• Benjamin-Lee / CodonAdaptationIndex
  Python Implementation of Codon Adaption Index
  ☆37Updated 2 years ago
• BioSystemsUM / MEWpy
  Metabolic Engineering Workbench
  ☆40Updated last year
• apcamargo / RNAsamba
  A tool for computing the coding potential of RNA transcript sequences using deep learning classification model
  ☆54Updated 2 years ago
• jwillis0720 / sadie
  The Complete Python Antibody Library
  ☆24Updated 2 months ago
• WarrenWeckesser / heatmapcluster
  A python library for generating a clustered heatmap with dendrograms.
  ☆34Updated 3 years ago
• gyorilab / pybiopax
  PyBioPAX: A python implementation of the BioPAX object model
  ☆24Updated last year
• biotite-dev / gecos
  Generated color schemes for sequence alignment visualizations
  ☆18Updated 2 years ago
• allie-walker / Natural-product-function
  scripts for predicting natural product activity from biosynthetic gene cluster sequences
  ☆23Updated last month
• opencobra / memote
  memote – the genome-scale metabolic model test suite
  ☆133Updated last year
• eternagame / draw_rna
  Draw RNA secondary structures in python.
  ☆48Updated 3 weeks ago
• Edinburgh-Genome-Foundry / python_codon_tables
  Codon usage tables in code-friendly format + Python bindings
  ☆37Updated 2 months ago
• althonos / pyhmmer
  Cython bindings and Python interface to HMMER3.
  ☆141Updated 3 weeks ago
• cdanielmachado / reframed
  ReFramed: metabolic modeling package
  ☆59Updated 2 months ago
• harmslab / epistasis
  A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.
  ☆35Updated last year