Alternatives and similar repositories for prism-4-paper:

Users that are interested in prism-4-paper are comparing it to the libraries listed below

• Finn-Lab / SanntiS
  SMBGC Annotation using Neural Networks Trained on Interpro Signatures
  ☆26Updated 3 weeks ago
• Tropini-lab / PUPpy
  Pipeline to design taxon-specific primes in defined bacterial communities.
  ☆15Updated 2 months ago
• wilkelab / Opfi
  A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.
  ☆21Updated 3 years ago
• YDaiLab / MiMeNet
  ☆18Updated 4 years ago
• NBChub / bgcflow
  Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)
  ☆41Updated 3 months ago
• allie-walker / Natural-product-function
  scripts for predicting natural product activity from biosynthetic gene cluster sequences
  ☆23Updated 2 years ago
• nselem / corason
  Bioinformatic Tools for study Evolution of metabolic diversity
  ☆32Updated last year
• michaelkyu / MobMess
  ☆19Updated 3 years ago
• cjneely10 / MetaSanity
  Pipeline for major biological analyses.
  ☆34Updated 2 years ago
• AlvaroRodriguezDelRio / nov-fams-pipeline
  ☆10Updated 2 weeks ago
• marbl / binnacle
  Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins
  ☆13Updated 3 years ago
• zreitz / multismash
  A workflow and scripts for large-scale antiSMASH analyses
  ☆37Updated 3 months ago
• FlyPythons / KEGGTools
  A collection of tools to download and process KEGG database
  ☆34Updated 6 years ago
• NPLinker / nplinker
  A python framework for microbial natural products data mining by integrating genomics and metabolomics data
  ☆18Updated this week
• SushiLab / magpipe
  ☆19Updated 2 years ago
• leylabmpi / endoR
  Code and manual of the endoR R-package (Ruaud et al, in preparation).
  ☆12Updated last year
• pereiramemo / BiG-MEx
  BiG-MEx implementation as Docker images and R packages
  ☆13Updated 3 years ago
• danielchang2002 / TaxiBGC_2022
  Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…
  ☆15Updated last year
• mdmparis / defense-finder-models
  MacSyFinder models allowing for a systematic search of anti-phage systems
  ☆22Updated last month
• BGI-Qingdao / GOMC
  ☆15Updated 6 months ago
• Kalan-Lab / lsaBGC
  lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters
  ☆37Updated this week
• kellylab / viral-protein-function-plm
  Viral protein family functional prediction using protein language models
  ☆18Updated 9 months ago
• cdanielmachado / cooccurrence
  Supplementary data for co-occurrence manuscript
  ☆10Updated 5 years ago
• Arcadia-Science / 2023-nr-clustering
  Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.
  ☆23Updated last year
• tamascogustavo / chimera
  Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.
  ☆17Updated 2 years ago
• BackofenLab / CRISPRidentify
  ☆27Updated 3 months ago
• ohlab / SMEG
  Strain-level Metagenomic Estimation of Growth rate (SMEG) measures growth rates of microbial strains from complex metagenomic dataset
  ☆20Updated 4 years ago
• biobakery / shortbred
  ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…
  ☆28Updated 2 months ago
• PAiewsakun / GRAViTy
  ☆17Updated 2 years ago
• bhattlab / SmORFinder
  A command line tool to identify and annotate small proteins in microbial sequencing datasets.
  ☆20Updated 2 years ago