nselem / corason
Bioinformatic Tools for study Evolution of metabolic diversity
☆31Updated 11 months ago
Alternatives and similar repositories for corason:
Users that are interested in corason are comparing it to the libraries listed below
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 6 months ago
- A workflow and scripts for large-scale antiSMASH analyses☆34Updated 2 months ago
- Pipeline for major biological analyses.☆34Updated 2 years ago
- ☆62Updated last month
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆39Updated last month
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32Updated 4 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆53Updated last week
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆24Updated this week
- BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…☆33Updated 5 years ago
- Tool to estimate genome quality of microbial eukaryotes☆36Updated 3 weeks ago
- PHANOTATE: a tool to annotate phage genomes.☆72Updated 2 months ago
- ☆14Updated last year
- ☆38Updated 2 months ago
- A toolkit for prokaryotic comparative genomics☆41Updated 3 weeks ago
- ☆45Updated last year
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆53Updated 6 months ago
- Exploring the "dusk matter" of the RNA virosphere☆35Updated 2 years ago
- BEAV: Bacterial Element Annotation reVamped☆60Updated 3 months ago
- ☆29Updated 11 months ago
- ☆27Updated last month
- Pipelines used in the lab.☆11Updated 4 months ago
- Protocol for finding informative protein families and then using them to score omic samples☆18Updated 2 years ago
- Materials and presentation for the 2023 ISB Microbiome course.☆24Updated 4 months ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆73Updated 5 months ago
- a python package for automated generation of phylogenetic trees from genbank files☆20Updated 2 weeks ago
- ☆48Updated 10 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆38Updated 4 months ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆57Updated 2 months ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆70Updated 5 years ago