nick-youngblut / gtdb_to_taxdump
Convert GTDB taxonomy to NCBI taxdump format
☆69Updated last year
Alternatives and similar repositories for gtdb_to_taxdump:
Users that are interested in gtdb_to_taxdump are comparing it to the libraries listed below
- GTDB taxonomy taxdump files with trackable TaxIds☆53Updated last week
- a collection of scripts for organising bacterial genomes by species☆76Updated 3 years ago
- Reorients assembled microbial sequences☆116Updated last month
- DDBJ Fast Annotation and Submission Tool☆80Updated this week
- Reference-quality genome reconstruction from complex metagenomes (or bacterial isolates) using only Nanopore long reads or both long and …☆32Updated last year
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆59Updated 5 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- ☆82Updated last year
- Estimate metagenomic coverage and sequence diversity☆51Updated 9 months ago
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆88Updated 8 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆68Updated 4 years ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆64Updated this week
- Horizontal gene transfer (HGT) identification pipeline☆57Updated last year
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆73Updated 2 years ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆78Updated this week
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 2 months ago
- ☆50Updated last year
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆46Updated 3 years ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆57Updated 2 weeks ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆62Updated 3 months ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆69Updated 10 months ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆77Updated 8 months ago
- IS mapping software☆54Updated 3 years ago
- GraftM - Rapid community profiles from metagenomes☆45Updated 9 months ago
- viralVerify: viral contig verification tool☆69Updated 3 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated this week