spacocha / Distribution-based-clusteringLinks
Extremely accurate algorithm used to group DNA sequences from microbial communities into operational taxonomic units (proxy for species) for ecological or biomedical research. This algorithm uses the information contained in the distribution of DNA sequences across samples along with sequence similarity to cluster sequences more accurately than …
☆14Updated 6 years ago
Alternatives and similar repositories for Distribution-based-clustering
Users that are interested in Distribution-based-clustering are comparing it to the libraries listed below
Sorting:
- the Metagenomic test for Presence Or Absence of Pathways☆13Updated 6 years ago
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 8 months ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 4 years ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated 3 weeks ago
- Detect contigs of complete circular genomes☆23Updated 6 years ago
- Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree☆16Updated last year
- Annotate your metagenome assemblies☆11Updated 7 years ago
- ☆16Updated 2 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25Updated last year
- Bioinformatics pipeline for nanopore sequencing data☆11Updated 6 years ago
- CAMITAX: Taxon labels for microbial genomes☆30Updated last year
- ☆19Updated 8 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆26Updated 2 years ago
- Interactive tools for metagenome visualization and binning in R☆28Updated 7 years ago
- ☆11Updated last year
- blast, shmlast☆22Updated 4 years ago
- simple and not slow ORF caller☆21Updated 7 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆31Updated 4 years ago
- De novo VIral Genome Annotator☆23Updated 11 months ago
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Updated 6 years ago
- Repository of the integrated mouse gut metagenomic catalog☆20Updated 3 years ago
- Influenza genome analysis Nextflow workflow☆22Updated last month
- OPAL: Open-community Profiling Assessment tooL☆30Updated 7 months ago
- Toolkit for establishing, updating, and validating GTDB species clusters☆21Updated 2 months ago
- annotation pipeline for microbial genomes and metagenomes☆18Updated 7 years ago
- ☆23Updated 5 years ago
- The genome annotation service provides automated gene annotation based on the RAST system. This deploys both client and service component…☆10Updated 4 years ago
- Compute strain abundance in a defined microbial community☆10Updated 2 years ago
- Confirming specific taxonomic groups within your samples.☆19Updated 4 years ago