Get microbial sequence data easier and faster
☆29Nov 7, 2019Updated 6 years ago
Alternatives and similar repositories for seeka
Users that are interested in seeka are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Identify phage regions in bacterial genomes for masking purposes☆33Sep 5, 2019Updated 7 years ago
- Assembly based core genome SNP alignments for bacteria☆25Oct 23, 2019Updated 7 years ago
- Predict plasmids from uncorrected long read data☆41Feb 27, 2026Updated 8 months ago
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆114Oct 12, 2026Updated 3 weeks ago
- CAMITAX: Taxon labels for microbial genomes☆32Dec 14, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Tool intended to pull out sequences and annotations between insertion sites specified by the user.☆15Apr 10, 2026Updated 6 months ago
- Searching for Horizontal Gene Transfer☆10Feb 22, 2020Updated 6 years ago
- Ultrafast sequence typing and gene detection from NGS raw reads☆20Apr 15, 2021Updated 5 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆60Nov 3, 2023Updated 2 years ago
- Create a tree using Mash distances☆196Oct 24, 2023Updated 3 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Dec 5, 2018Updated 7 years ago
- a collection of scripts for organising bacterial genomes by species☆79Mar 18, 2022Updated 4 years ago
- ☆10Jun 16, 2022Updated 4 years ago
- Bonsai: Fast, flexible taxonomic analysis and classification☆69Oct 23, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆35Jul 27, 2026Updated 3 months ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆271Jun 11, 2026Updated 4 months ago
- A pipeline for extracting SSU rRNA gene from wgs data and applying them for further diversity analysis☆10Jan 30, 2016Updated 10 years ago
- Colinear block visualisation tool☆32Jan 17, 2024Updated 2 years ago
- Locus and lineage tests for bacterial GWAS☆28Oct 5, 2017Updated 9 years ago
- Rapid determination of appropriate reference genomes.☆103Jan 22, 2025Updated last year
- Code Safety Inspection Service☆20Sep 23, 2022Updated 4 years ago
- Histosketching Using Little Kmers☆56May 25, 2023Updated 3 years ago
- Bacterial Annotation by Learned Representation of Genes☆62Mar 26, 2026Updated 7 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Feb 12, 2016Updated 10 years ago
- IS mapping software☆59Dec 3, 2021Updated 4 years ago
- A bioinformatics software focused on quality control based on species criteria☆15Updated this week
- Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop☆75Apr 1, 2026Updated 7 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆67Jun 16, 2025Updated last year
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆19Mar 24, 2019Updated 7 years ago
- taxonomic classifier based on the kraken2 algorithms and more☆46Dec 12, 2025Updated 10 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆130Jun 2, 2026Updated 5 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A scalable bacterial genome assembly, annotation and analysis pipeline☆80Dec 5, 2023Updated 2 years ago
- Fast alignment-free pangenome creation and exploration☆28Apr 16, 2020Updated 6 years ago
- "Reads to report" for public health and clinical microbiology☆145Dec 9, 2025Updated 10 months ago
- Awesome resources related to Galaxy project☆12Jul 6, 2026Updated 3 months ago
- Small utility to quickly find size and GC content of a fasta file. Can also extract sequence. Who doesn't like QUICK and DIRTY!☆13Aug 27, 2018Updated 8 years ago
- WtP: Phage identification via nextflow and docker or singularity☆108Oct 6, 2026Updated 3 weeks ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Nov 6, 2025Updated 11 months ago