PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.
☆20Sep 1, 2026Updated this week
Alternatives and similar repositories for pysylph
Users that are interested in pysylph are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated last year
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆25Nov 25, 2025Updated 9 months ago
- Fast, parallel Rust implementation of Prodigal for prokaryotic gene prediction in microbial genomes☆29Jul 26, 2026Updated last month
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆263May 13, 2026Updated 3 months ago
- Query sequence database by HMMs arranged in predefined synteny structure☆21Jun 23, 2026Updated 2 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated 2 years ago
- ☆15Jul 24, 2026Updated last month
- ☆18Aug 28, 2026Updated last week
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆27Sep 12, 2024Updated last year
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆190Mar 17, 2026Updated 5 months ago
- Follow up to Grace Blackwell's 661k dataset, for 2023☆153Jun 10, 2026Updated 2 months ago
- Generate basic stats for an assembly.☆13Feb 12, 2023Updated 3 years ago
- Split k-mer analysis – version 2☆105Jul 9, 2026Updated last month
- Recombination-free trees☆72Jul 24, 2026Updated last month
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆318Feb 3, 2026Updated 7 months ago
- A Python interface to gb-io, a fast GenBank parser written in Rust.☆24May 21, 2026Updated 3 months ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆56May 8, 2026Updated 3 months ago
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆27Mar 25, 2026Updated 5 months ago
- Just another minhash implementation.☆13Aug 26, 2026Updated last week
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆107Jul 14, 2026Updated last month
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated 2 months ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated last year
- kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more☆48Jul 12, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- More scalable dereplication for metagenome assembled genomes☆87Updated this week
- Python bindings for the TaxonKit library☆43Aug 3, 2026Updated last month
- Genomewide Epistasis Analysis on Bacteria☆15Aug 7, 2026Updated 3 weeks ago
- A repo with just adapter sequences☆14Jul 7, 2025Updated last year
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆22Aug 17, 2026Updated 2 weeks ago
- ☆35Oct 6, 2025Updated 10 months ago
- Finding regions of similarity between plasmids☆17Jul 15, 2026Updated last month
- Genome size estimation from long read overlaps☆93Updated this week
- k-mers and the like☆23Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆28Feb 12, 2026Updated 6 months ago
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Jan 19, 2026Updated 7 months ago
- Convert genbank files to a swath of other formats☆32Aug 9, 2026Updated 3 weeks ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19May 3, 2024Updated 2 years ago
- A NumPy port of the foldseek code for encoding protein structures to 3di.☆82Aug 22, 2025Updated last year
- 🦠🧬 Unraveling Viral Genomes from Metagenomes☆11Jul 30, 2026Updated last month
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50May 18, 2026Updated 3 months ago