PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.
☆20Dec 12, 2024Updated last year
Alternatives and similar repositories for pysylph
Users that are interested in pysylph are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated 7 months ago
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆22Nov 25, 2025Updated 4 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆241Oct 12, 2025Updated 5 months ago
- ☆15Feb 10, 2025Updated last year
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆26Sep 12, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆298Feb 3, 2026Updated last month
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated last year
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆179Mar 17, 2026Updated last week
- Follow up to Grace Blackwell's 661k dataset, for 2023☆137Mar 19, 2026Updated last week
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆17Jan 13, 2026Updated 2 months ago
- Split k-mer analysis – version 2☆104Updated this week
- Generate basic stats for an assembly.☆13Feb 12, 2023Updated 3 years ago
- Recombination-free trees☆63Sep 1, 2025Updated 6 months ago
- A Python interface to gb-io, a fast GenBank parser written in Rust.☆24Mar 9, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Feb 27, 2026Updated last month
- alignment-free coverage calculation for metagenomic binning >100 times faster☆50Mar 13, 2025Updated last year
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆27Mar 7, 2026Updated 2 weeks ago
- Just another minhash implementation.☆12Mar 12, 2026Updated 2 weeks ago
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆99Feb 8, 2026Updated last month
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated 11 months ago
- kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more☆45Nov 5, 2025Updated 4 months ago
- ☆17Updated this week
- A NumPy port of the foldseek code for encoding protein structures to 3di.☆79Aug 22, 2025Updated 7 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A repo with just adapter sequences☆15Jul 7, 2025Updated 8 months ago
- ☆34Oct 6, 2025Updated 5 months ago
- Python bindings for the TaxonKit library☆43Feb 2, 2026Updated last month
- Finding regions of similarity between plasmids☆17Nov 2, 2022Updated 3 years ago
- k-mers and the like☆22Mar 2, 2026Updated 3 weeks ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆28Feb 12, 2026Updated last month
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Jan 19, 2026Updated 2 months ago
- Genome size estimation from long read overlaps☆81Mar 9, 2026Updated 2 weeks ago
- Genomewide Epistasis Analysis on Bacteria