Alternatives and similar repositories for pore-c-py

Users that are interested in pore-c-py are comparing it to the libraries listed below

• epi2me-labs / wf-pore-c
  ☆40Updated 3 months ago
• TcbfGroup / Tcbf
  A pipeline for identifying conserved topologically associating domain boundaries among multiple species.
  ☆15Updated 10 months ago
• AnimalGenomicsETH / bovine-graphs
  Integrate multiple genome assemblies into a pangenome graph
  ☆34Updated 2 years ago
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆30Updated 3 years ago
• seqcode / allo
  Allo: a multi-mapped read rescue strategy for gene regulatory analyses
  ☆24Updated 9 months ago
• maxplanck-ie / HiCAssembler
  Software to assemble contigs/scaffolds into chromosomes using Hi-C data
  ☆28Updated 8 months ago
• uio-bmi / graph_peak_caller
  ChIP-seq peak caller for reads mapped to a graph-based reference genome
  ☆21Updated 9 months ago
• josiegleeson / BamSlam
  Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files
  ☆14Updated last year
• XiDsLab / TAGET
  ☆19Updated 2 years ago
• lorrainea / CNEFinder
  CNEFinder: Finding Conserved Non-coding Elements in Genomes
  ☆24Updated 3 years ago
• dellytools / sansa
  Structural variant VCF annotation, duplicate removal and comparison
  ☆33Updated 3 months ago
• twlab / methylGrapher
  Methylation analysis pipeline for genome graph
  ☆12Updated 2 weeks ago
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆42Updated last year
• hitbc / gcSV
  ☆21Updated 3 months ago
• LappalainenLab / lorals
  ☆36Updated 2 years ago
• GeneDx / pgr-tk-notebooks
  Jupyter Notebooks Using PGR-TK for various human pangenome analysis tasks
  ☆16Updated 2 years ago
• kcakdemir / HiCPlotter
  “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau
  ☆19Updated 4 years ago
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆34Updated last week
• Shao-Group / scallop2
  ☆11Updated last week
• ACEnglish / adotto
  Working space for the GIAB TR benchmarking project
  ☆21Updated 7 months ago
• nanoporetech / Pore-C-Snakemake
  ☆33Updated 2 years ago
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆65Updated 2 months ago
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆26Updated 11 months ago
• comprna / R2Dtool
  Analyse RNA feature distributions.
  ☆16Updated 5 months ago
• zyndagj / BSMAPz
  Updated and optimized fork of BSMAP
  ☆22Updated 4 years ago
• novoalab / Nano3P_Seq
  Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)
  ☆12Updated last year
• lh3 / etrf
  Exact Tandem Repeat Finder (not a TRF replacement)
  ☆49Updated 5 years ago
• vgteam / giraffe-sv-paper
  ☆42Updated last year
• yiliao1022 / Pepper3Dgenome
  ☆15Updated 3 years ago
• cfarkas / annotate_my_genomes
  A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes
  ☆29Updated last year