epi2me-labs / pore-c-py
☆13Updated 7 months ago
Alternatives and similar repositories for pore-c-py:
Users that are interested in pore-c-py are comparing it to the libraries listed below
- ☆37Updated last month
- Integrate multiple genome assemblies into a pangenome graph☆33Updated 2 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated 11 months ago
- ☆17Updated 2 years ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆22Updated 2 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆23Updated 3 years ago
- ☆16Updated 4 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- A pipeline for identifying conserved topologically associating domain boundaries among multiple species.☆14Updated 8 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆64Updated this week
- ☆42Updated 10 months ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆40Updated 5 months ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated 9 months ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated 6 months ago
- Algorithm to detect germline and de novo transposon insertions☆27Updated 11 months ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆23Updated 8 months ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 6 months ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆19Updated 4 years ago
- Variant annotation and merging pipeline☆32Updated 2 months ago
- Updated and optimized fork of BSMAP☆22Updated 4 years ago
- ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.☆22Updated 3 months ago
- ☆15Updated 2 years ago
- Set of tools to manipulate and visualize modified base bam files☆52Updated 2 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 9 months ago
- A gene fusion caller for long-read transcriptome sequencing data.☆18Updated 11 months ago
- Pan-3D genome analysis of soybean Hi-C data☆12Updated 2 years ago
- Pore-C support☆53Updated 2 years ago
- Identification of segmental duplications in the genome☆26Updated 3 years ago
- ☆33Updated last year