Alternatives and similar repositories for pore-c-py

Users that are interested in pore-c-py are comparing it to the libraries listed below

• TcbfGroup / Tcbf
  A pipeline for identifying conserved topologically associating domain boundaries among multiple species.
  ☆15Updated last week
• epi2me-labs / wf-pore-c
  ☆41Updated 4 months ago
• xiaochuanle / Falign
  An effective alignment tool for long noisy 3C data (e.g. Pore-C and C-walk)
  ☆10Updated 8 months ago
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆30Updated 3 years ago
• XiDsLab / TAGET
  ☆19Updated 2 years ago
• uio-bmi / graph_peak_caller
  ChIP-seq peak caller for reads mapped to a graph-based reference genome
  ☆21Updated 10 months ago
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆26Updated 2 weeks ago
• WGLab / DeepRepeat
  An accurate repeat detection from Nanopore data using deep learning and image techniques
  ☆22Updated 2 years ago
• Xinglab / TideHunter
  TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
  ☆20Updated last year
• Runsheng / trackcluster
  An analysis pipeline for Nanopore direct-RNA sequencing
  ☆13Updated 7 months ago
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆42Updated 2 weeks ago
• multiz / multiz
  DNA multiple sequence aligner, official version from Penn State's Miller Lab
  ☆34Updated 6 years ago
• maxplanck-ie / HiCAssembler
  Software to assemble contigs/scaffolds into chromosomes using Hi-C data
  ☆28Updated 9 months ago
• twlab / methylGrapher
  Methylation analysis pipeline for genome graph
  ☆12Updated last month
• seqcode / allo
  Allo: a multi-mapped read rescue strategy for gene regulatory analyses
  ☆24Updated 9 months ago
• AnimalGenomicsETH / bovine-graphs
  Integrate multiple genome assemblies into a pangenome graph
  ☆34Updated 3 years ago
• comprna / R2Dtool
  Analyse RNA feature distributions.
  ☆16Updated 6 months ago
• vpc-ccg / sedef
  Identification of segmental duplications in the genome
  ☆27Updated 3 years ago
• lorrainea / CNEFinder
  CNEFinder: Finding Conserved Non-coding Elements in Genomes
  ☆24Updated 3 years ago
• OliveiraDS-hub / ChimeraTE
  A pipeline to detect chimeric transcripts derived from genes and transposable elements.
  ☆30Updated last month
• kcakdemir / HiCPlotter
  “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau
  ☆19Updated 4 years ago
• lh3 / etrf
  Exact Tandem Repeat Finder (not a TRF replacement)
  ☆49Updated 5 years ago
• lh3 / minisv
  Lightweight mosaic/somatic SV caller for long reads (WIP)
  ☆29Updated 6 months ago
• mobinasri / secphase
  Phasing reads with secondary alignments
  ☆18Updated 6 months ago
• hitbc / gcSV
  ☆21Updated 4 months ago
• josiegleeson / BamSlam
  Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files
  ☆14Updated last year
• JBerthelier / ParasiTE
  Invertory of TE-gene isoforms
  ☆11Updated last year
• jonassibbesen / vgrna-project-paper
  Bash scripts and data used in pantranscriptomic paper
  ☆22Updated 2 years ago
• tobiasrausch / lorax
  A long-read analysis toolbox for cancer and population genomics
  ☆23Updated 4 months ago
• oscarlr / MsPAC
  Phase reads, assemble haplotypes and detect SVs
  ☆19Updated 4 years ago