Alternatives and similar repositories for pore-c-py

Users that are interested in pore-c-py are comparing it to the libraries listed below

• xiaochuanle / Falign
  An effective alignment tool for long noisy 3C data (e.g. Pore-C and C-walk)
  ☆14Updated last year
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆46Updated 6 months ago
• maxfieldk / TE-Seq
  Snakemake pipeline to analyze transposable element 'omics data.
  ☆30Updated last week
• TcbfGroup / Tcbf
  A pipeline for identifying conserved topologically associating domain boundaries among multiple species.
  ☆16Updated 7 months ago
• koszullab / hicstuff
  Simple library/pipeline to generate and handle Hi-C data.
  ☆39Updated last year
• epi2me-labs / wf-pore-c
  ☆48Updated 2 months ago
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆69Updated 2 months ago
• ConesaLab / SQANTI
  ☆14Updated 2 years ago
• LappalainenLab / lorals
  ☆38Updated 2 years ago
• idanefroni / Conservatory
  Identification of conserved non-coding sequences in plants
  ☆31Updated 3 months ago
• maickrau / ribotin
  ☆38Updated 3 weeks ago
• human-pangenomics / hprc-tutorials
  ☆19Updated last year
• treangenlab / methphaser
  MethPhaser: methylation-based haplotype phasing of human genomes
  ☆52Updated 10 months ago
• kcakdemir / HiCPlotter
  “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau
  ☆19Updated 5 years ago
• mritchielab / restrander
  ☆12Updated last month
• clemgoub / rm2gff3
  Convert RepeatMasker ".out" file into a gff3 with colors!!!
  ☆24Updated 5 years ago
• Augroup / miniQuant
  Improving gene isoform quantification with miniQuant
  ☆31Updated 2 weeks ago
• tobiaszehnder / IPP
  Interspecies Point Projection - A tool for comparative genomics beyond alignable sequence
  ☆23Updated last month
• JBerthelier / ParasiTE
  Invertory of TE-gene isoforms
  ☆13Updated 2 years ago
• LingbinNi / soybean_pan-3D_genome_analysis
  Pan-3D genome analysis of soybean Hi-C data
  ☆12Updated 2 years ago
• vgteam / giraffe-sv-paper
  ☆44Updated last year
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• PacificBiosciences / MethBat
  A battery of methylation tools for PacBio HiFi reads
  ☆47Updated last month
• josiegleeson / BamSlam
  Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files
  ☆15Updated last year
• ACEnglish / kanpig
  Kmer Analysis of Pileups for Genotyping
  ☆35Updated this week
• FAANG / analysis-TAGADA
  GENE-SWitCH project RNA-Seq analysis pipeline
  ☆29Updated 11 months ago
• dwinter / repeatR
  read and analyse RepeatMasker output
  ☆27Updated 2 years ago
• GeneDx / pgr-tk-notebooks
  ☆16Updated 2 years ago
• PacificBiosciences / HiFiCNV
  Copy number variant caller and depth visualization utility for PacBio HiFi reads
  ☆47Updated last year
• GaoLabXDU / HiSV
  HiSV: a computational pipeline for structural variation detection from Hi-C data
  ☆18Updated 7 months ago