BGAcademy23 / smudgeplot
Biodiversity Genomics Academy 2023: Understanding k-mers and ploidy using Smudgeplot
☆10Updated last year
Alternatives and similar repositories for smudgeplot:
Users that are interested in smudgeplot are comparing it to the libraries listed below
- SambaR: Snp datA Management and Basic Analyses in R☆27Updated 3 weeks ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- Tutorials on evolutionary genomics☆42Updated 2 years ago
- Quantifying Introgression via Branch Lengths☆49Updated 2 years ago
- Tutorial about R package PopGenome☆41Updated 5 years ago
- Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV☆14Updated 3 weeks ago
- ☆17Updated 7 years ago
- The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…☆38Updated last year
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- Tools and Utilities for msmc and msmc2☆47Updated last year
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆32Updated 10 months ago
- k-mer learning materials☆49Updated 9 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆16Updated last year
- Likelihood-based Selective Sweep Detection☆37Updated last year
- Detecting natural selection from population-based genetic data☆27Updated 5 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆30Updated 10 months ago
- GONE: Scripts, programs and an example data set☆43Updated last year
- ☆18Updated last year
- Scripts for population genetics analysis☆19Updated 2 years ago
- Population genetics analyses from NGS data☆25Updated 3 years ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆28Updated 2 weeks ago
- Annotation helper tool for the manual curation of transposable element consensus sequences☆46Updated 8 months ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated last year
- ☆38Updated last year
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆15Updated this week
- ☆19Updated 2 years ago
- MSMC2 Scripts☆23Updated 10 months ago
- Repository for speciation genomics website☆24Updated 6 months ago
- Infer demographic history with the Moran model☆47Updated 10 months ago
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆19Updated 5 years ago