BGAcademy23 / smudgeplotLinks
Biodiversity Genomics Academy 2023: Understanding k-mers and ploidy using Smudgeplot
☆11Updated last year
Alternatives and similar repositories for smudgeplot
Users that are interested in smudgeplot are comparing it to the libraries listed below
Sorting:
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- Tutorial about R package PopGenome☆41Updated 6 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- ☆32Updated 4 years ago
- Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV☆16Updated 4 months ago
- GONE: Scripts, programs and an example data set☆47Updated last year
- Detecting natural selection from population-based genetic data☆27Updated 6 years ago
- ☆18Updated last year
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆37Updated last month
- Chromosome-level synteny plotting using orthologous regions☆29Updated 8 months ago
- A organelle de novo genome assembly toolkit☆59Updated 3 months ago
- Toolkit for evolutionary analyses of linkage groups☆31Updated 10 months ago
- ☆40Updated last year
- Likelihood-based Selective Sweep Detection☆37Updated last year
- ☆20Updated 2 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- ☆10Updated 4 years ago
- Tool for fully-automated inference of species trees from raw genome assemblies☆35Updated last week
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆20Updated 11 months ago
- A genome-wide IM blockwise likelihood estimation toolkit☆16Updated 11 months ago
- Automated de novo assembly of whole chloroplast genomes.☆45Updated 8 months ago
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- predicting DFE and alpha from polymorphism data☆28Updated 6 years ago
- Annotation helper tool for the manual curation of transposable element consensus sequences☆48Updated 3 months ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆34Updated last year
- Tools and Utilities for msmc and msmc2☆47Updated last year
- Pipelines for the production of Treeval data☆25Updated this week
- ☆39Updated last year
- Tutorials on evolutionary genomics☆44Updated 3 years ago