BGAcademy23 / smudgeplotLinks
Biodiversity Genomics Academy 2023: Understanding k-mers and ploidy using Smudgeplot
☆11Updated last year
Alternatives and similar repositories for smudgeplot
Users that are interested in smudgeplot are comparing it to the libraries listed below
Sorting:
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV☆16Updated 5 months ago
- Tutorial about R package PopGenome☆41Updated 6 years ago
- SambaR: Snp datA Management and Basic Analyses in R☆28Updated last month
- GONE: Scripts, programs and an example data set☆48Updated last year
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆17Updated last month
- Likelihood-based Selective Sweep Detection☆38Updated last year
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- ☆32Updated 4 years ago
- Toolkit for evolutionary analyses of linkage groups☆31Updated 11 months ago
- ☆40Updated last year
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆34Updated last year
- ☆18Updated last year
- Annotation helper tool for the manual curation of transposable element consensus sequences☆48Updated 3 months ago
- Tools and Utilities for msmc and msmc2☆47Updated last year
- A genome-wide IM blockwise likelihood estimation toolkit☆16Updated last year
- Chromosome-level synteny plotting using orthologous regions☆29Updated 9 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- Quantifying Introgression via Branch Lengths☆52Updated 2 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆31Updated 5 months ago
- ☆21Updated 3 years ago
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆35Updated last year
- Alignment-Based Sequence extraction☆15Updated 3 years ago
- ☆40Updated 2 years ago
- Graph-aware Retrieval of Selective Sweeps☆21Updated 9 months ago
- Automated de novo assembly of whole chloroplast genomes.☆46Updated 9 months ago
- A organelle de novo genome assembly toolkit☆60Updated 4 months ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆38Updated 2 months ago