BGAcademy23 / smudgeplotLinks
Biodiversity Genomics Academy 2023: Understanding k-mers and ploidy using Smudgeplot
☆11Updated 2 years ago
Alternatives and similar repositories for smudgeplot
Users that are interested in smudgeplot are comparing it to the libraries listed below
Sorting:
- Topology weighting by iterative sampling of sub-trees☆82Updated 11 months ago
- Quantifying Introgression via Branch Lengths☆55Updated 3 years ago
- Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV☆16Updated 11 months ago
- Hybridization detection using phylogenetic invariants☆52Updated last year
- SambaR: Snp datA Management and Basic Analyses in R☆32Updated last month
- GONE: Scripts, programs and an example data set☆47Updated 4 months ago
- Tutorial about R package PopGenome☆44Updated 6 years ago
- ☆42Updated 2 years ago
- MSMC2 Scripts☆28Updated 2 months ago
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆67Updated last year
- Recovering genes from targeted sequence capture data☆130Updated 5 months ago
- Mobile Genetic Elements Retrieving Tool☆16Updated 6 months ago
- Graph-aware Retrieval of Selective Sweeps☆22Updated last year
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆36Updated last year
- Tutorials on evolutionary genomics☆46Updated 3 years ago
- A program to call variants from genome alignment☆81Updated 7 months ago
- Tutorials on phylogenetic and phylogenomic inference☆49Updated 7 months ago
- Code used to analyse WGS data of giraffe in Coimbra et al. 2021☆11Updated 2 years ago
- RADseq workflow using STACKS☆61Updated 2 weeks ago
- R and Python scripts used to simulate gene trees under coalescent model and detect gene flow using triple frequency☆15Updated 2 years ago
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆88Updated last year
- Presentations from the course☆38Updated 2 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆39Updated last year
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆25Updated last month
- R functions for generating site frequency spectra (SFS) from a VCF file.☆28Updated 5 years ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆74Updated last week
- ☆23Updated 3 years ago
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- A organelle de novo genome assembly toolkit☆70Updated 9 months ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆84Updated 4 years ago