Alternatives and similar repositories for GFF3toolkit

Users that are interested in GFF3toolkit are comparing it to the libraries listed below

• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆129Updated 10 months ago
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆82Updated 2 years ago
• marbl / SALSA
  SALSA: A tool to scaffold long read assemblies with Hi-C data
  ☆185Updated last year
• giesselmann / nanopype
  Snakemake pipelines for nanopore sequencing data archiving and processing
  ☆90Updated 3 years ago
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆100Updated 3 weeks ago
• MariaNattestad / Assemblytics
  Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…
  ☆141Updated 7 months ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆97Updated last year
• epi2me-labs / wf-transcriptomes
  ☆95Updated this week
• PacificBiosciences / pb-assembly
  PacBio Assembly Tool Suite: Reads in ⇨ Assembly out
  ☆118Updated 4 years ago
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆169Updated last year
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆113Updated last month
• biocorecrg / master_of_pores
  Nextflow pipeline for analysis of direct RNA Nanopore reads
  ☆103Updated last month
• EVidenceModeler / EVidenceModeler
  source code for EVM
  ☆112Updated 6 months ago
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆67Updated last month
• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆152Updated 2 years ago
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆93Updated last month
• MikeAxtell / ShortStack
  ShortStack: Comprehensive annotation and quantification of small RNA genes
  ☆93Updated last month
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆173Updated 4 years ago
• Nextomics / NextPolish
  Fast and accurately polish the genome generated by long reads.
  ☆226Updated 5 months ago
• tangerzhang / ALLHiC
  ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data
  ☆177Updated 8 months ago
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆216Updated 6 months ago
• ncbi / egapx
  Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation
  ☆141Updated 3 weeks ago
• nadegeguiglielmoni / genome_assembly_tools
  List of genome assembly tools
  ☆68Updated 3 weeks ago
• CompSynBioLab-KoreaUniv / FunGAP
  FunGAP: fungal Genome Annotation Pipeline
  ☆111Updated 2 weeks ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆117Updated last month
• DessimozLab / read2tree
  a tool for inferring species tree from sequencing reads
  ☆150Updated 4 months ago
• nanoporetech / pipeline-structural-variation
  Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
  ☆114Updated 3 years ago
• parklab / bamsnap
  ☆122Updated 7 months ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆118Updated 2 months ago
• sujaikumar / assemblage
  Tools for working with second gen assemblies, fasta sequences, etc
  ☆93Updated 8 years ago