Python programs for processing GFF3 files
☆104May 20, 2026Updated last week
Alternatives and similar repositories for GFF3toolkit
Users that are interested in GFF3toolkit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- cgat-apps repository☆36Apr 9, 2025Updated last year
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆569May 18, 2026Updated last week
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Jan 3, 2025Updated last year
- Ploidy agnostic phasing pipeline and algorithm☆49Jan 3, 2024Updated 2 years ago
- source code for EVM☆124Nov 29, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…☆112Jan 30, 2026Updated 3 months ago
- An accurate GFF3/GTF lift over pipeline☆539Aug 1, 2023Updated 2 years ago
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆192Oct 15, 2025Updated 7 months ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆179Oct 20, 2024Updated last year
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆108Nov 17, 2025Updated 6 months ago
- TD2☆40May 17, 2026Updated last week
- scripts to parse and analyse MCScanX collinearity output☆32Mar 3, 2020Updated 6 years ago
- Simple tools for working with Hi-C data☆20Dec 19, 2018Updated 7 years ago
- The tools are used for displaying hic signal of genome☆25Jan 4, 2021Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Tool for decomposition centromeric assemblies and long reads into monomers☆37Sep 17, 2022Updated 3 years ago
- Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.☆139Mar 11, 2026Updated 2 months ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆272Mar 15, 2026Updated 2 months ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆460Apr 12, 2026Updated last month
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Jul 27, 2023Updated 2 years ago
- This is the standalone version of the EviAnn pipeline☆147May 14, 2026Updated 2 weeks ago
- Detecting multi-genome synteny using minimizer graph mapping☆106May 20, 2026Updated last week
- Genome annotation with AUGUSTUS☆330May 18, 2026Updated last week
- Using Deep Learning to predict gene annotations☆289May 21, 2026Updated last week
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆197Sep 22, 2020Updated 5 years ago
- A pipeline used to identify different modes of duplicated gene pairs☆120Jul 22, 2025Updated 10 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆50Jun 27, 2020Updated 5 years ago
- Generate an interactive dot plot from mummer or minimap alignments☆217Jan 17, 2024Updated 2 years ago
- A repo contains historical and updated MTEC libraries.☆18May 18, 2026Updated last week
- scripts used for processing and analyzing data in the article.☆13Oct 31, 2019Updated 6 years ago
- Manipulate genomic features and validate the syntax and reference sequence of your GFF3 files☆10Dec 26, 2022Updated 3 years ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆24May 16, 2026Updated last week
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆164Nov 4, 2025Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- PASA software☆200Feb 12, 2025Updated last year
- ☆16May 7, 2023Updated 3 years ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆31Nov 9, 2025Updated 6 months ago
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆24Jan 21, 2026Updated 4 months ago
- FastK based version of Merqury☆32Jan 19, 2026Updated 4 months ago
- A tool for recovering synteny blocks from multiple alignment☆33Oct 18, 2021Updated 4 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆110Jun 17, 2022Updated 3 years ago