Python programs for processing GFF3 files
☆105Oct 8, 2026Updated last week
Alternatives and similar repositories for GFF3toolkit
Users that are interested in GFF3toolkit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- cgat-apps repository☆37Updated this week
- Ploidy agnostic phasing pipeline and algorithm☆51Jan 3, 2024Updated 2 years ago
- source code for EVM☆129Sep 22, 2026Updated 3 weeks ago
- Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…☆116Jan 30, 2026Updated 8 months ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Jan 3, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A Rust-Based suite of utilities for ultra-fast genomic feature extraction☆47Dec 18, 2025Updated 10 months ago
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆202Aug 17, 2026Updated 2 months ago
- An accurate GFF3/GTF lift over pipeline☆561Aug 1, 2023Updated 3 years ago
- The tools are used for displaying hic signal of genome☆25Jan 4, 2021Updated 5 years ago
- Callable Loci... and more☆24Apr 8, 2026Updated 6 months ago
- Detecting multi-genome synteny using minimizer graph mapping☆117Sep 28, 2026Updated 2 weeks ago
- PASA software☆204Feb 12, 2025Updated last year
- Using Deep Learning to predict gene annotations☆310Oct 6, 2026Updated last week
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆180Oct 20, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆25Updated this week
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆468Jun 17, 2026Updated 4 months ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆114Nov 17, 2025Updated 11 months ago
- A pipeline used to identify different modes of duplicated gene pairs☆124Jul 22, 2025Updated last year
- Simple tools for working with Hi-C data☆20Dec 19, 2018Updated 7 years ago
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆116Jul 11, 2026Updated 3 months ago
- Genome annotation with AUGUSTUS☆344May 30, 2026Updated 4 months ago
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆12Dec 7, 2022Updated 3 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Mar 3, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Generate an interactive dot plot from mummer or minimap alignments☆219Jan 17, 2024Updated 2 years ago
- ☆202Sep 22, 2020Updated 6 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆39Sep 17, 2022Updated 4 years ago
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆38Apr 20, 2026Updated 5 months ago
- Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.☆140Jul 15, 2026Updated 3 months ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆292Jul 7, 2026Updated 3 months ago
- Best practices and workflow for genome annotation☆80Apr 14, 2025Updated last year
- Multi-genome synteny block visualization tool☆67Updated this week
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Jul 27, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Tiberius is a deep learning gene finder.☆143Updated this week
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆175Nov 4, 2025Updated 11 months ago
- A program for assessing the T2T genome continuity and completeness☆98Updated this week
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆50Jun 27, 2020Updated 6 years ago
- A repo contains historical and updated MTEC libraries.☆19Aug 28, 2026Updated last month
- A genome assembly assessment pipeline.☆39Jun 5, 2026Updated 4 months ago
- scripts used for processing and analyzing data in the article.☆13Oct 31, 2019Updated 6 years ago