NAL-i5K / GFF3toolkit
Python programs for processing GFF3 files
☆96Updated 11 months ago
Alternatives and similar repositories for GFF3toolkit:
Users that are interested in GFF3toolkit are comparing it to the libraries listed below
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆96Updated last year
- Dfam Transposable Element Tools Docker container.☆88Updated last week
- accurate LiftOver tool for new genome assemblies☆124Updated 7 months ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆81Updated 2 years ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆160Updated last year
- Variant Calling Pipeline Using GATK4 and Nextflow☆54Updated 2 years ago
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆116Updated 4 years ago
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆101Updated 3 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆89Updated 3 years ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆144Updated last year
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 3 weeks ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆183Updated 10 months ago
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆140Updated 4 months ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆71Updated 3 years ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 3 years ago
- ☆119Updated 4 months ago
- SV caller for nanopore data☆91Updated 4 years ago
- Tools for plotting methylation data in various ways☆144Updated this week
- Jasmine: SV Merging Across Samples☆208Updated 3 months ago
- Same species annotation lift over pipeline.☆96Updated last year
- ☆88Updated 2 months ago
- a tool for inferring species tree from sequencing reads☆146Updated last month
- FEELnc : FlExible Extraction of LncRNA☆87Updated 6 months ago
- ONT assembly and Illumina polishing pipeline☆91Updated 4 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆113Updated 3 months ago
- Nanopore data assembler☆146Updated 2 years ago
- GenMap - Fast and Exact Computation of Genome Mappability☆106Updated 9 months ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆140Updated 3 weeks ago