NAL-i5K / GFF3toolkit
Python programs for processing GFF3 files
☆95Updated 7 months ago
Related projects ⓘ
Alternatives and complementary repositories for GFF3toolkit
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated last week
- ☆150Updated last month
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆80Updated 2 years ago
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆113Updated 4 years ago
- accurate LiftOver tool for new genome assemblies☆110Updated 3 months ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆93Updated 9 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆88Updated 2 years ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆128Updated last year
- Same species annotation lift over pipeline.☆96Updated last year
- Dfam Transposable Element Tools Docker container.☆84Updated last month
- pbsv - PacBio structural variant (SV) calling and analysis tools☆129Updated last week
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆146Updated 11 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆182Updated 5 months ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆105Updated last month
- Software for clustering de novo assembled transcripts and counting overlapping reads☆68Updated 2 years ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆111Updated 2 weeks ago
- a signal-level demultiplexer for Oxford Nanopore reads☆124Updated 3 years ago
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆136Updated this week
- a tool for inferring species tree from sequencing reads☆143Updated this week
- Variant calling tool for long-read sequencing data☆100Updated 5 months ago
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆93Updated last month
- Nanopore data assembler☆135Updated 2 years ago
- Constructing a pangenome gene graph☆174Updated 3 months ago
- Tools for working with second gen assemblies, fasta sequences, etc☆92Updated 8 years ago
- ☆111Updated this week
- ShortStack: Comprehensive annotation and quantification of small RNA genes☆88Updated last week
- source code for EVM☆103Updated 10 months ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆125Updated 2 years ago