rlorigro / nanopore_assembly_and_polishing_assessment
Automation of pipelines that depend on preexisting assembly, polishing, and alignment tools. Performance evaluation and visualization of assembly and polishing
☆13Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for nanopore_assembly_and_polishing_assessment
- A module for improving the insertion sequences of structural variant calls☆29Updated 3 years ago
- Improved Phased Assembler☆28Updated 2 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- Method to optimally select samples for validation and resequencing☆26Updated 3 years ago
- Identification of segmental duplications in the genome☆26Updated 2 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆19Updated 4 months ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- assembly evaluation tool☆34Updated 2 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- FastK based version of Merqury☆22Updated last week
- ☆31Updated 4 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆25Updated last month
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆13Updated last year
- Convert HAL to VG☆21Updated 2 months ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- Detect and phase minor SNVs from long-read sequencing data☆15Updated 2 years ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 2 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆45Updated 3 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 6 years ago