Alternatives and similar repositories for mapping_pipeline

Users that are interested in mapping_pipeline are comparing it to the libraries listed below

• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆86Updated last week
• mahulchak / svmu
  A program to call variants from genome alignment
  ☆81Updated 2 months ago
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆80Updated 4 years ago
• LiLabAtVT / DeepTE
  Neural network classification of TE
  ☆90Updated last month
• phasegenomics / juicebox_scripts
  A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats
  ☆67Updated 4 years ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆98Updated last year
• mapleforest / HaploMerger2
  ☆44Updated 8 years ago
• wk8910 / bio_tools
  Useful bioinformatic scripts
  ☆57Updated 7 months ago
• liangclab / HERA
  ☆77Updated 5 years ago
• c-zhou / oatk
  A organelle de novo genome assembly toolkit
  ☆60Updated 4 months ago
• lh3 / srf
  SRF: Satellite Repeat Finder
  ☆96Updated last year
• tanghaibao / allhic
  Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
  ☆60Updated 6 months ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆57Updated 2 years ago
• alekseyzimin / EviAnn_release
  This is the standalone version of the EviAnn pipeline
  ☆100Updated this week
• SAMtoBAM / MUMandCo
  MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation
  ☆71Updated 3 months ago
• steuernb / NLR-Annotator
  NLR-Annotator upload
  ☆68Updated last year
• EichlerLab / pav
  Phased assembly variant caller
  ☆121Updated 7 months ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆119Updated this week
• yeeus / GCI
  A program for assessing the T2T genome continuity
  ☆81Updated 2 weeks ago
• lh3 / dipcall
  Reference-based variant calling pipeline for a pair of phased haplotype assemblies
  ☆100Updated 4 years ago
• aubombarely / Organelle_PBA
  A software to assemble chloroplast and mitochodrial genomes using PacBio data
  ☆40Updated 5 years ago
• YaoZhou89 / TGG
  tomato graph pangenome
  ☆83Updated 2 years ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆100Updated 5 months ago
• starskyzheng / panpop
  Application of pan-genome for population
  ☆107Updated 9 months ago
• phyloacc / PhyloAcc
  PhyloAcc a software to detect the changes of conservation of a genomic region
  ☆32Updated 3 months ago
• nclark-lab / RERconverge
  Analysis of convergence between organismal traits and DNA/protein sequences
  ☆55Updated 2 weeks ago
• 0xTCG / biser
  A fast tool for detecting and decomposing segmental duplications in genome assemblies
  ☆49Updated last year
• santiagosnchez / vcf2fasta
  Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file
  ☆51Updated last week
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆91Updated 2 months ago
• codialab / panacus
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
  ☆111Updated last month