Alternatives and similar repositories for copykat_pipeline

Users that are interested in copykat_pipeline are comparing it to the libraries listed below

• ZxZhou4150 / Redeconve
  Deconvolution of spatial transcriptomics at single-cell resolution
  ☆17Updated 8 months ago
• soumelis-lab / ICELLNET
  ☆20Updated last year
• lanagarmire / Single-cell-drug-repositioning
  ☆16Updated 10 months ago
• CICAMS-Liu-lab / ECGEA
  ☆16Updated 4 years ago
• XZouProjects / scCODE
  The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data
  ☆13Updated last year
• BKI-immuno-KNS / MANAscore
  A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types
  ☆11Updated 3 months ago
• qingnanl / gsdensity
  ☆9Updated 10 months ago
• Coolgenome / GastricCancer
  ☆12Updated last year
• Olaniru / human-fetal-pancreas
  analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages
  ☆10Updated 2 years ago
• LaughneyLab / ContactTracing_tutorial
  ☆17Updated 8 months ago
• elo073 / 5loclung
  Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung
  ☆12Updated last year
• Coolgenome / PDAC
  ☆15Updated 3 months ago
• zgyaru / anti-PD1_ESCC
  ☆17Updated last year
• SunXQlab / scMLnet
  Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
  ☆26Updated 3 years ago
• MarioniLab / hbca
  Code used to process the data of the HBCA project
  ☆27Updated last year
• bioinfo-biols / SEVtras
  sEV-containing droplet identification in scRNA-seq data (SEVtras)
  ☆25Updated 3 months ago
• zhang-bin-98 / A-spatial-transcriptome-landscape-of-mouse-aging
  ☆13Updated 7 months ago
• wanglabtongji / SpaceScanner
  Scanner of specific spatial patterns in tissues
  ☆13Updated 2 years ago
• Teichlab / SKM_ageing_atlas
  ☆12Updated last year
• azizilab / DIISCO_public
  Publically accessible code for DIISCO method
  ☆10Updated 7 months ago
• pritykinlab / ulipstic-analysis
  ☆9Updated 10 months ago
• dpeerlab / progressive-plasticity-crc-metastasis
  Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"
  ☆14Updated 6 months ago
• jcolinge / BulkSignalR
  BulkSignalR
  ☆19Updated 2 months ago
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 2 months ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆26Updated 3 years ago
• JunyueCaoLab / EasySci
  Computational pipeline to process EasySci-RNA data.
  ☆20Updated last year
• AndersonHu85 / ccRCC_multiomics
  ☆16Updated last year
• kaifuchenlab / MEBOCOST
  ☆19Updated 2 weeks ago
• davidliwei / PS
  Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…
  ☆14Updated last year
• secrierlab / EMT
  This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.
  ☆12Updated 2 years ago