sdentro / copykat_pipeline
☆11Updated last year
Alternatives and similar repositories for copykat_pipeline:
Users that are interested in copykat_pipeline are comparing it to the libraries listed below
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆31Updated 4 years ago
- Deconvolution of spatial transcriptomics at single-cell resolution☆15Updated 4 months ago
- Code used to process the data of the HBCA project☆22Updated 11 months ago
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆13Updated last year
- Integration of gut cell atlases☆17Updated 2 months ago
- Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…☆19Updated 2 years ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- ☆27Updated last year
- Computational pipeline to process EasySci-RNA data.☆18Updated last year
- cell type deconvolution for multi-condition bulk RNA-seq data☆22Updated 2 years ago
- ☆19Updated 8 months ago
- Codes used in LISTA project.☆10Updated 9 months ago
- ☆17Updated 3 years ago
- ☆54Updated last year
- ☆15Updated last year
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆9Updated 2 years ago
- ☆13Updated 7 months ago
- ☆15Updated last year
- Calculate NEPC risk score from bulk transcriptome data or single-cell RNA-seq for prostate cancer☆13Updated 2 months ago
- ☆16Updated last year
- Lung cancer 10X analysis☆11Updated 4 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆11Updated 2 years ago
- R tools for analysis and visualization of single-cell subclustering data☆15Updated 9 months ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆22Updated 2 weeks ago
- Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney☆15Updated 10 months ago
- Waelchli-lab / Single-cell-atlas-of-the-human-brain-vasculature-accross-development-adulthood-and-diseaseMolecular atlas of the human brain vasculature accross development, adulthood and disease at the single-cell level☆11Updated 6 months ago
- Spatial transcriptomics of heart tissue☆19Updated 2 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆29Updated 2 months ago
- analysis script for GBM single cell RNA seq data☆17Updated 3 years ago
- R package gathering a set of wrappers to apply various integration methods to Seurat objects (and rate such methods)☆14Updated 2 weeks ago