Alternatives and similar repositories for copykat_pipeline

Users that are interested in copykat_pipeline are comparing it to the libraries listed below

• LungCellAtlas / scRNAseq_pipelines
  Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas
  ☆38Updated 4 years ago
• MarioniLab / hbca
  Code used to process the data of the HBCA project
  ☆32Updated last year
• ventolab / Human-Gonadal-Development-Atlas_HGDA
  ☆21Updated 9 months ago
• XZouProjects / scCODE
  The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data
  ☆14Updated last year
• wanglabtongji / SpaceScanner
  Scanner of specific spatial patterns in tissues
  ☆13Updated 3 years ago
• wanglabtongji / STRIDE
  STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …
  ☆26Updated last year
• Jonyyqn / scMalignantFinder
  scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells…
  ☆15Updated last week
• soumelis-lab / ICELLNET
  ☆20Updated 3 months ago
• ZxZhou4150 / Redeconve
  Deconvolution of spatial transcriptomics at single-cell resolution
  ☆19Updated last year
• gabrielakinker / CCLE_heterogeneity
  ☆58Updated last year
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 7 months ago
• LaughneyLab / ContactTracing_tutorial
  ☆16Updated last year
• yi-zhang / STHD
  STHD: probabilistic cell typing of Single spots in whole Transcriptome spatial data with High Definition
  ☆29Updated 5 months ago
• elo073 / 5loclung
  Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung
  ☆12Updated last year
• klarman-cell-observatory / HTAPP-Pipelines
  A record of the analysis pipelines used to create the HTAPP data
  ☆33Updated 5 months ago
• yunguan-wang / Spacia
  ☆30Updated 5 months ago
• CICAMS-Liu-lab / ECGEA
  ☆16Updated 4 years ago
• dyxmvp / Spatial_ATAC-seq
  ☆23Updated 2 years ago
• kaifuchenlab / MEBOCOST
  ☆27Updated last month
• liuqivandy / SpaGene
  ☆24Updated 2 years ago
• JunyueCaoLab / EasySci
  Computational pipeline to process EasySci-RNA data.
  ☆21Updated last year
• quadbio / organoid_regulomes
  Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids
  ☆29Updated 2 years ago
• theislab / moslin
  Code, data and analysis for moslin.
  ☆15Updated last year
• dpeerlab / progressive-plasticity-crc-metastasis
  Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"
  ☆16Updated 10 months ago
• bioinfo-biols / SEVtras
  sEV-containing droplet identification in scRNA-seq data (SEVtras)
  ☆26Updated 7 months ago
• hernet / transcriptional-map-nk
  We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…
  ☆12Updated last year
• Teichlab / PanGIAtlas
  Integration of gut cell atlases
  ☆27Updated 7 months ago
• kkdey / GSSG
  Gene Set + S2G strategy annotations analyzed for disease architecture
  ☆55Updated 2 years ago
• HectorRDB / condiments
  Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
  ☆29Updated 10 months ago
• PFPrzytycki / CellWalkR
  CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements
  ☆20Updated this week