sdentro / copykat_pipelineLinks
☆13Updated last year
Alternatives and similar repositories for copykat_pipeline
Users that are interested in copykat_pipeline are comparing it to the libraries listed below
Sorting:
- ☆21Updated 5 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Updated 5 years ago
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆14Updated 2 years ago
- Code used to process the data of the HBCA project☆32Updated last year
- ☆61Updated 2 years ago
- ☆21Updated last year
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated last year
- ☆17Updated 4 years ago
- Deconvolution of spatial transcriptomics at single-cell resolution☆20Updated last year
- ☆30Updated 8 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Updated 10 months ago
- ☆24Updated 2 years ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Updated 10 months ago
- Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"☆17Updated last year
- Hierarchical Cell Annotation☆26Updated last year
- cell type deconvolution for multi-condition bulk RNA-seq data☆30Updated 3 years ago
- Computational pipeline to process EasySci-RNA data.☆22Updated last year
- A record of the analysis pipelines used to create the HTAPP data☆34Updated 8 months ago
- ☆13Updated last year
- CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements☆21Updated 2 months ago
- scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells…☆16Updated 3 weeks ago
- Scanner of specific spatial patterns in tissues☆14Updated 3 years ago
- ☆18Updated 3 years ago
- Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung☆12Updated 2 years ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆14Updated last year
- R package for generalized binary covariance decomposition.☆13Updated 5 months ago
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Updated 10 months ago
- ☆17Updated last year
- ☆22Updated 2 years ago
- ☆17Updated last year