ma-compbio / SpiceMixLinks
spatial transcriptome, single cell
☆73Updated 2 years ago
Alternatives and similar repositories for SpiceMix
Users that are interested in SpiceMix are comparing it to the libraries listed below
Sorting:
- ☆47Updated 6 months ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆117Updated 2 years ago
- ☆41Updated 3 weeks ago
- End-to-end analysis of spatial multi-omics data☆102Updated 2 weeks ago
- ☆48Updated 2 years ago
- Multi-omic velocity inference☆116Updated last year
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆52Updated last year
- Additional code and analysis from the single-cell integration benchmarking project☆71Updated 3 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆67Updated 7 months ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆48Updated 4 years ago
- Python implementation of Milo for differential abundance testing on KNN graph☆81Updated 11 months ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆127Updated 2 months ago
- Non-parametric density inference for single-cell analysis.☆73Updated 8 months ago
- CAST package☆42Updated last year
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆69Updated 3 months ago
- Single cell omics biology annotations☆53Updated 9 months ago
- Python implementation of the Slingshot pseudotime algorithm☆69Updated 3 months ago
- Metacells - Single-cell RNA Sequencing Analysis☆117Updated last year
- Quantifying experimental perturbations at single cell resolution☆112Updated last year
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆22Updated last month
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆59Updated this week
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆77Updated 2 weeks ago
- Accelerated, Python-only, single-cell integration benchmarking metrics☆85Updated 2 weeks ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- TACCO: Transfer of Annotations to Cells and their COmbinations☆62Updated 5 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆100Updated 11 months ago
- Cell cycle inference in single-cell RNA-seq☆50Updated 2 years ago
- ☆62Updated last year
- SIMBA: SIngle-cell eMBedding Along with features☆66Updated last year
- Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics☆58Updated 8 months ago