Spatial omics analysis toolbox
☆394Oct 27, 2026Updated this week
Alternatives and similar repositories for Giotto
Users that are interested in Giotto are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆491Jan 22, 2026Updated 9 months ago
- BANKSY: spatial clustering☆170Updated this week
- Spatial Transcriptomics Capture Location Deconvolution☆216Oct 20, 2025Updated last year
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆465Oct 19, 2026Updated last week
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆191Jan 8, 2026Updated 9 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Spatial Single Cell Analysis in Python☆612Updated this week
- TRAjectory-based Differential Expression analysis for SEQuencing data☆319Jun 17, 2025Updated last year
- ☆74May 28, 2025Updated last year
- NicheNet: predict active ligand-target links between interacting cells☆683Oct 23, 2026Updated last week
- A Toolbox for Spatial Transcriptomics Analysis☆172May 6, 2025Updated last year
- ☆136Aug 23, 2026Updated 2 months ago
- Interpretation of cell states using reference single-cell maps☆329Dec 19, 2025Updated 10 months ago
- R package to infer biological activities from omics data using a collection of methods.☆313Dec 16, 2025Updated 10 months ago
- A novel machine learning pipeline to analyse spatial transcriptomics data☆262Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆203Aug 12, 2025Updated last year
- Spatial alignment of single cell transcriptomic data.☆375Jul 1, 2025Updated last year
- LIANA: a LIgand-receptor ANalysis frAmework☆253Aug 7, 2024Updated 2 years ago
- Multi-sample multi-group scRNA-seq analysis tools☆248Jul 6, 2026Updated 3 months ago
- Easy single cell analysis platform for enrichment☆238Updated this week
- Conversion between scRNA-seq objects☆209May 5, 2026Updated 5 months ago
- ☆105May 4, 2026Updated 5 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆450Aug 25, 2026Updated 2 months ago
- Test genes for Spatial Variation☆193May 7, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆314Jun 16, 2026Updated 4 months ago
- CellRank: dynamics from multi-view single-cell data☆459Oct 14, 2026Updated 2 weeks ago
- Spatial mapping of cell types by integration of transcriptomics data☆104Apr 25, 2026Updated 6 months ago
- Methods to discover gene programs on single-cell data☆212Oct 12, 2026Updated 2 weeks ago
- Inferring CNV from Single-Cell RNA-Seq☆686Updated this week
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆348Apr 23, 2024Updated 2 years ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆102Apr 30, 2026Updated 6 months ago
- High dimensional weighted gene co-expression network analysis☆493Jun 16, 2026Updated 4 months ago
- R toolkit for the analysis of single-cell chromatin data☆431Sep 11, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆150Jun 25, 2026Updated 4 months ago
- R package for integrating and analyzing multiple single-cell datasets☆435Aug 18, 2026Updated 2 months ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆790Jan 6, 2024Updated 2 years ago
- Convert Seurat objects to 10x Genomics Loupe files.☆165Updated this week
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆491Jun 6, 2025Updated last year
- Scaling Single Cell Analysis to Millions of Cells☆309Updated this week
- overview of spatial datasets☆79Updated this week