atifrahman / HAWKLinks
Hitting associations with k-mers
☆44Updated 3 years ago
Alternatives and similar repositories for HAWK
Users that are interested in HAWK are comparing it to the libraries listed below
Sorting:
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆39Updated 2 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆44Updated 6 years ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- Specifications for PacBio® native file formats☆31Updated last year
- Toolkit for genome-wide analysis of tandem repeats☆58Updated 2 months ago
- Structural variant (SV) analysis tools☆39Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Updated 6 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- Guided synteny alignment between duplicated genomes (within specified quota constraint)☆59Updated 8 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆31Updated 2 weeks ago
- ☆27Updated 2 weeks ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated last year
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated 3 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 5 months ago
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- Haplotype and population structure inference using neural networks.☆27Updated last year
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Transfer coordinates across genomes☆23Updated 7 months ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆49Updated 7 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- SV genotyping with long reads☆40Updated 2 years ago
- Structural variant caller☆55Updated 4 years ago
- extract MSAs from genome variation graphs☆34Updated 5 years ago
- This is the Haplotypo repository☆22Updated last year