atifrahman / HAWKLinks
Hitting associations with k-mers
☆44Updated 3 years ago
Alternatives and similar repositories for HAWK
Users that are interested in HAWK are comparing it to the libraries listed below
Sorting:
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆38Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Structural variant (SV) analysis tools☆38Updated last year
- A method for variant graph genotyping based on exact alignment of k-mers☆86Updated 6 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated last month
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆44Updated 5 years ago
- Specifications for PacBio® native file formats☆31Updated 11 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Toolkit for genome-wide analysis of tandem repeats☆58Updated 3 weeks ago
- Long-read splice alignment with high accuracy☆63Updated last year
- This is the Haplotypo repository☆22Updated last year
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- Population-wide Deletion Calling☆35Updated 6 months ago
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated last year
- Structural variant caller☆55Updated 3 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated last month
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 3 months ago
- Fast and accurate tool for estimating genomic distances between genome-skims☆44Updated 2 years ago
- ☆51Updated 6 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 11 months ago
- Guided synteny alignment between duplicated genomes (within specified quota constraint)☆58Updated 8 years ago
- Haplotype and population structure inference using neural networks.☆27Updated 10 months ago