tpook92 / HaploBlocker
R-package: Calculation of haplotype blocks and libraries
☆30Updated last month
Alternatives and similar repositories for HaploBlocker:
Users that are interested in HaploBlocker are comparing it to the libraries listed below
- Haplotype and population structure inference using neural networks.☆27Updated 4 months ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated last year
- ☆23Updated last year
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆25Updated 5 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 4 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- Genealogical Estimation of Variant Age (GEVA)☆28Updated 3 years ago
- Transfer coordinates across genomes☆23Updated last week
- Transposable element polymorphism identification☆33Updated 4 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 7 years ago
- Upscaling SV detection to a multi-population level.☆22Updated 4 years ago
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆35Updated last month
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- Integrate multiple genome assemblies into a pangenome graph☆34Updated 2 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 2 weeks ago
- Transposable Elements MOvement detection using LOng reads☆21Updated 4 months ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- ☆32Updated 4 years ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- A tool for phasing and imputing haplotypes in 10k+ low coverage sequencing samples☆10Updated 4 years ago
- SV genotyping with long reads☆40Updated last year
- A haplotype analysis toolkit for natural variation study.☆30Updated last year
- Scripts to convert between file formats for various analyses☆16Updated 2 months ago
- ☆10Updated 10 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- scripts to parse and analyse MCScanX collinearity output☆31Updated 5 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆23Updated 3 years ago
- A repo contains historical and updated MTEC libraries.☆17Updated 5 years ago