R-package: Calculation of haplotype blocks and libraries
☆36Jul 22, 2025Updated last year
Alternatives and similar repositories for HaploBlocker
Users that are interested in HaploBlocker are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆22Jul 7, 2022Updated 4 years ago
- Modular Breeding Program Simulator☆46Feb 19, 2026Updated 7 months ago
- HadoopCNV is a MapReduce-based copy number variation caller for genome sequencing data☆20Apr 25, 2017Updated 9 years ago
- Efficient Local Ancestry Inference☆17Nov 10, 2025Updated 11 months ago
- Scripts for analyses and figures for SNP STR Imputation manuscript☆14Jul 24, 2018Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A JBrowse 1 plugin to view multiple alignment format (MAF) files☆27Oct 25, 2023Updated 2 years ago
- Differential k-mer analysis☆42Jan 29, 2024Updated 2 years ago
- Pangenome Graph Variation Format (PGVF)☆19Sep 24, 2020Updated 6 years ago
- The R tool associated with 3VmrMLM, a comprehensive GWAS method for identifying QTNs, QTN-by-environment interactions, and QTN-by-QTN int…☆35Dec 29, 2025Updated 9 months ago
- A software package that includes BayesCpi, BayesR, BayesRC, and two extensions of BayesRC to overlapping data: BayesRC+ and BayesRCpi☆16Feb 28, 2023Updated 3 years ago
- Stochastic-Lanczos-Expedited Mixed Models☆10Dec 10, 2025Updated 9 months ago
- A toolkit for exploring regions of variation in pangenomes☆15Jun 12, 2026Updated 3 months ago
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- MPH is a C++ program for fast REML estimation of genetic (co)variance components.☆15Jan 5, 2026Updated 9 months ago
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated last year
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 8 years ago
- Documentation for the Helium pedigree visualization software☆17Apr 3, 2024Updated 2 years ago
- A Mathematica pipeline for genetic analysis in multiparental populations☆13Jan 7, 2025Updated last year
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆41Mar 24, 2025Updated last year
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆14Mar 16, 2026Updated 6 months ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 11 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆40Aug 20, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A new simple and efficient software to PCA and Cluster For popolation VCF File☆84Aug 1, 2026Updated 2 months ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 3 years ago
- AncestralClust☆13Jul 9, 2025Updated last year
- ☆21Dec 13, 2023Updated 2 years ago
- Pipeline to phase a genome into two homeologous subgenomes. Parental genomes are required.☆10May 22, 2025Updated last year
- Individual-Level, Summary-Level and Single-Step Bayesian Regression Models for Genomic Prediction and Genome-Wide Association Studies☆60Jun 19, 2026Updated 3 months ago
- Data Simulation for Life Science and Breeding☆45Jun 13, 2025Updated last year
- RDF and SPARQL ideas to build on top of [odgi](https://github.com/pangenome/odgi)☆13Mar 20, 2024Updated 2 years ago
- An application to compare genetic maps with D3 & Shiny☆22Feb 28, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A method for variant graph genotyping based on exact alignment of k-mers☆88Apr 1, 2019Updated 7 years ago
- A read alignment visualization library for long reads☆10Aug 6, 2022Updated 4 years ago
- ☆11Feb 20, 2024Updated 2 years ago
- ☆46Apr 18, 2026Updated 5 months ago
- VCF-kit: Assorted utilities for the variant call format☆135May 22, 2026Updated 4 months ago
- A tutorial of the BLUPF90 family programs☆30Apr 28, 2025Updated last year
- Course notes, worksheets, and timetable for Bayesian Hierarchical Modelling course☆28Apr 25, 2022Updated 4 years ago