tpook92 / HaploBlockerLinks
R-package: Calculation of haplotype blocks and libraries
☆35Updated 5 months ago
Alternatives and similar repositories for HaploBlocker
Users that are interested in HaploBlocker are comparing it to the libraries listed below
Sorting:
- Haplotype and population structure inference using neural networks.☆27Updated last year
- Computational Analysis of Gene Expression Evolution☆45Updated 4 months ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Updated 2 years ago
- methods for orphan gene prediction paper optimization☆25Updated 4 years ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- Genome-wide scan for balancing selection using beta statistic☆30Updated 2 years ago
- read and analyse RepeatMasker output☆27Updated 2 years ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆57Updated 6 months ago
- Chromosome-level synteny plotting using orthologous regions☆31Updated last year
- ☆26Updated 11 months ago
- A haplotype analysis toolkit for natural variation study.☆31Updated 2 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆30Updated 4 months ago
- ☆31Updated 6 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- R package to draw syntenic plots in 3 different styles☆42Updated 4 months ago
- ☆44Updated last year
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆44Updated 6 years ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Tutorial on using popular tools for learning about population history☆53Updated 7 years ago
- Software for ancestry estimation in unrelated individuals☆22Updated last week
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆24Updated 5 years ago
- ☆16Updated last year
- findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…☆38Updated 2 years ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Updated 6 years ago
- A repo contains historical and updated MTEC libraries.☆18Updated 5 years ago
- scripts for the project of seven thaliana genomes assembly☆42Updated 4 years ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆36Updated 2 years ago