tpook92 / HaploBlockerLinks
R-package: Calculation of haplotype blocks and libraries
☆33Updated 2 months ago
Alternatives and similar repositories for HaploBlocker
Users that are interested in HaploBlocker are comparing it to the libraries listed below
Sorting:
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆34Updated 2 years ago
- Haplotype and population structure inference using neural networks.☆27Updated 10 months ago
- Likelihood-based Selective Sweep Detection☆40Updated last year
- ☆26Updated 7 months ago
- Computational Analysis of Gene Expression Evolution☆43Updated last month
- Compute N50/NG50 and auN/auNG☆32Updated 2 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆53Updated 3 months ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- ☆42Updated last year
- Transposable Elements MOvement detection using LOng reads☆24Updated 2 months ago
- Software for ancestry estimation in unrelated individuals☆20Updated this week
- Integrate multiple genome assemblies into a pangenome graph☆34Updated 3 years ago
- Tools and Utilities for msmc and msmc2☆48Updated 2 months ago
- ☆31Updated 5 years ago
- A repo contains historical and updated MTEC libraries.☆18Updated 5 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- ☆31Updated last year
- Upscaling SV detection to a multi-population level.☆22Updated 2 months ago
- scripts for the project of seven thaliana genomes assembly☆41Updated 4 years ago
- Genealogical Estimation of Variant Age (GEVA)☆31Updated 4 years ago
- R package to draw syntenic plots in 3 different styles☆42Updated last month
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 5 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆43Updated 11 months ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- read and analyse RepeatMasker output☆25Updated 2 years ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆68Updated 3 months ago
- findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…☆38Updated last year
- A haplotype analysis toolkit for natural variation study.☆30Updated 2 years ago