Protobuff and gRPC specifications for the MinKNOW LIMS Interface
☆13Apr 20, 2021Updated 5 years ago
Alternatives and similar repositories for minknow_lims_interface
Users that are interested in minknow_lims_interface are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Searching large collections of sequencing data with genome-scale queries☆17Feb 5, 2026Updated 3 months ago
- Giraffe_View is designed to help assess and visualize the accuracy of long-read sequencing datasets.☆13Sep 3, 2024Updated last year
- Predict MLST directly from uncorrected long reads☆27Oct 31, 2025Updated 6 months ago
- Nextflow implementation of the smoove workflow and other tools for SV calling and QC☆12Nov 12, 2020Updated 5 years ago
- Development of an NLP algorithm to temporally track patient emotional state using digital footprint☆13May 27, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Comprehensive resistance detection from WGS data☆19Mar 23, 2026Updated last month
- qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.☆79Dec 15, 2020Updated 5 years ago
- Demo Code for the Xpring SDK☆11Aug 31, 2023Updated 2 years ago
- Information, files etc. concerning applications☆16May 5, 2016Updated 10 years ago
- Bioinformatics scripts☆14Dec 23, 2024Updated last year
- Multistreaming RTMP server☆11Apr 25, 2026Updated last week
- An R package for working with phenotypic screening data☆10Nov 22, 2018Updated 7 years ago
- ☆16Apr 29, 2024Updated 2 years ago
- A Matlab implementation for automatic segmentation with a graphical user interface☆17Apr 7, 2019Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- XRP Ledger API for Golang☆18Mar 14, 2019Updated 7 years ago
- Hybrid method based on a variable-order de bruijn Graph for the error Correction of Long Reads☆11Jan 20, 2021Updated 5 years ago
- A tool for removing redundant genomes from a set of assemblies☆80Sep 10, 2025Updated 7 months ago
- Metal Activity Heuristic of Metalloprotein and Enzymatic Sites (MAHOMES) - Predicts if a protein bound metal ion is enzymatic or non-enzy…☆11Apr 19, 2022Updated 4 years ago
- A collection of plots for long read sequencing FastQ files from devices like Oxford Nanopore's MinION and PromethION.☆12Feb 14, 2023Updated 3 years ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆19Oct 27, 2020Updated 5 years ago
- Monitor Library Genesis and Sci-Hub's torrent health☆15Updated this week
- Read Until client library for Nanopore Sequencing☆108Sep 25, 2024Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆35Dec 11, 2019Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Multiple sequence alignment browser☆11Dec 12, 2022Updated 3 years ago
- Suite of tools for use in genome assembly and consensus. Work in progress.☆31Mar 22, 2021Updated 5 years ago
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆24Updated this week
- Protobuf and gRPC specifications for the MinKNOW API☆69Apr 29, 2026Updated last week
- Code referenced in the manuscript 'The 16S rRNA gene for species and strain-level microbiome analysis'☆11Sep 26, 2019Updated 6 years ago
- Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.☆105Jan 28, 2026Updated 3 months ago
- Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification☆14Apr 8, 2024Updated 2 years ago
- POOL (Peptide Optimization with Optimal Learning): code for "Discovering de novo peptide substrates for enzymes using machine learning"☆10Oct 18, 2018Updated 7 years ago
- Just Another JAva Package for Sequence Analysis☆24Dec 2, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Continuous Wavelet Dynamic Time Warping for unbalanced global mapping of two signals☆20Jan 14, 2019Updated 7 years ago
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Jan 19, 2026Updated 3 months ago
- A repo with just adapter sequences☆15Jul 7, 2025Updated 9 months ago
- Host depletion optimised for clinical metagenomic sequencing applications☆17Nov 18, 2024Updated last year
- Sage Robots A4 robot arm☆12Mar 2, 2022Updated 4 years ago
- A database for signatures of public genomic sources☆18Jan 1, 2026Updated 4 months ago
- Parallelised and automated construction of metagenomic classifier databases of different tools☆21Updated this week