petrikemppainen / LDna
LDna: an R package to perform linkage disequilibrium network analysis
☆31Updated last year
Alternatives and similar repositories for LDna:
Users that are interested in LDna are comparing it to the libraries listed below
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- Graph-aware Retrieval of Selective Sweeps☆21Updated 7 months ago
- Infer demographic history with the Moran model☆47Updated 2 months ago
- Tutorial on using popular tools for learning about population history☆50Updated 6 years ago
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- feature-based deep learning for the identification of selective sweeps☆55Updated last week
- ☆26Updated last year
- SambaR: Snp datA Management and Basic Analyses in R☆28Updated this week
- Tools and Utilities for msmc and msmc2☆47Updated last year
- R functions for generating site frequency spectra (SFS) from a VCF file.☆27Updated 5 years ago
- predicting DFE and alpha from polymorphism data☆28Updated 6 years ago
- Presentations from the course☆36Updated last year
- Tutorial about R package PopGenome☆41Updated 6 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆34Updated last year
- Detecting natural selection from population-based genetic data☆27Updated 6 years ago
- Software for ancestry estimation in unrelated individuals☆18Updated this week
- GONE: Scripts, programs and an example data set☆46Updated last year
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆17Updated 3 months ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- Repository for speciation genomics website☆25Updated 9 months ago
- The integrated Sequentially Markovian Coalescent☆13Updated last month
- Quantifying Introgression via Branch Lengths☆51Updated 2 years ago
- ☆24Updated 7 years ago
- R package for analysis of hybrids and hybrid zones☆21Updated last year
- Pinpoints the mutation favored by selection☆34Updated 3 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆49Updated last week
- ☆20Updated 4 years ago
- Sex assignment through coverage☆17Updated last year
- ☆28Updated 2 years ago
- Likelihood-based Selective Sweep Detection☆37Updated last year