LDna: an R package to perform linkage disequilibrium network analysis
☆31Apr 12, 2024Updated last year
Alternatives and similar repositories for LDna
Users that are interested in LDna are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools for identifying introgressed archaic sequence.☆12Jun 20, 2017Updated 8 years ago
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆50Nov 13, 2023Updated 2 years ago
- ☆20Sep 10, 2020Updated 5 years ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆44Nov 9, 2019Updated 6 years ago
- A framework for simulation-based inference in evolutionary biology☆28Jan 13, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- GONE: Scripts, programs and an example data set☆52Jul 20, 2025Updated 8 months ago
- A software package for local ancestry inference and haplotype phasing☆45Apr 20, 2023Updated 2 years ago
- predicting DFE and alpha from polymorphism data☆28Oct 4, 2018Updated 7 years ago
- Efficient Local Ancestry Inference☆17Nov 10, 2025Updated 4 months ago
- Tutorial on using popular tools for learning about population history☆53Jul 18, 2018Updated 7 years ago
- An R package to detect, classify, and visualize genome rearrangements☆15Aug 4, 2020Updated 5 years ago
- faster haplotype-based admixture inference and dating software☆10Nov 25, 2025Updated 4 months ago
- Multisample Variant Format ToolKit☆10Oct 12, 2021Updated 4 years ago
- ☆22Jul 7, 2022Updated 3 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- ☆17Dec 2, 2015Updated 10 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Sep 5, 2025Updated 6 months ago
- Two locus likelihoods and ARGs under changing population size☆14Dec 18, 2025Updated 3 months ago
- ☆33Feb 24, 2026Updated last month
- An R Package to build and simulate coalescent models☆20Updated this week
- Course material for UBC Biol525D☆12Aug 15, 2019Updated 6 years ago
- Efficient Permutation-based GWAS for Normal and Skewed Phenotypic Distributions☆34Nov 14, 2024Updated last year
- Demographic analysis of Brassica oleracea☆10Jan 30, 2026Updated last month
- This is a tool for speculation of ancestral allel, calculation of sfs and drawing its bar plot. It is easy-to-use and runing fast. What y…☆11Dec 16, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Hybridization detection using phylogenetic invariants☆52Oct 29, 2024Updated last year
- Topology weighting by iterative sampling of sub-trees☆86Jan 5, 2025Updated last year
- Assessing confidence in introgression among four populations☆28Apr 19, 2021Updated 4 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆44Nov 13, 2019Updated 6 years ago
- General tools for genomic analyses.☆388Feb 28, 2025Updated last year
- Estimating repeat spectra and genome length from low-coverage genome skims☆12Aug 6, 2023Updated 2 years ago
- Automatically exported from code.google.com/p/densitree☆29Jul 27, 2025Updated 8 months ago
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆67Apr 25, 2024Updated last year
- Methods for examining PCA locally along the genome.☆88Aug 13, 2024Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆15Jun 6, 2023Updated 2 years ago
- ☆13Sep 11, 2025Updated 6 months ago
- Tutorials on phylogenetic and phylogenomic inference☆51May 4, 2025Updated 10 months ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13May 1, 2019Updated 6 years ago
- Short scripts for converting genetic data between formats.☆30Nov 11, 2022Updated 3 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆32Jun 12, 2025Updated 9 months ago
- Software for painlessly estimating average nucleotide diversity within and between populations☆158Oct 27, 2025Updated 5 months ago