shanwai1234 / GPWASView external linksLinks
Genome-Phenome Wide Association Study
☆15Feb 7, 2023Updated 3 years ago
Alternatives and similar repositories for GPWAS
Users that are interested in GPWAS are comparing it to the libraries listed below
Sorting:
- Genotyping of segregating mobile elements insertions☆19Jul 29, 2021Updated 4 years ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Jun 6, 2019Updated 6 years ago
- my commonly used perl script☆19Aug 28, 2020Updated 5 years ago
- ☆12Feb 16, 2025Updated 11 months ago
- Camoco is a fully-fledged software package for building co-expression networks and analyzing the overlap interactions among genes.☆43Aug 7, 2023Updated 2 years ago
- ☆11Dec 9, 2022Updated 3 years ago
- ☆12Apr 10, 2021Updated 4 years ago
- hot_scan is a free software to detect genomic regions unusually rich (hotspot) in a given pattern via scan statistics☆10Oct 17, 2013Updated 12 years ago
- Kdrew's scripts for handling protein complex map data☆14Jun 12, 2025Updated 8 months ago
- Awk, bash, python scripts for processing NGS data☆14Nov 6, 2015Updated 10 years ago
- Method to optimally select samples for validation and resequencing☆30Apr 6, 2021Updated 4 years ago
- G2P is an integrated genomic selection (GS) package for predicting phenotypes from genotypes. It includes 15 GS algorithms and 13 evaluat…☆15Sep 27, 2017Updated 8 years ago
- the miscellaneous analysis scripts used in the research of pan-Zea genome and genetics☆17Aug 25, 2022Updated 3 years ago
- parallelLastz: Running Lastz in parallel☆17Sep 13, 2024Updated last year
- Benchmarking variant calling in polyploids☆15Nov 26, 2021Updated 4 years ago
- conserved non-coding sequence☆16Feb 21, 2022Updated 3 years ago
- ☆14Jul 27, 2019Updated 6 years ago
- Efficient Local Ancestry Inference☆17Nov 10, 2025Updated 3 months ago
- Code for the Brassica oleracea/rapa/napus genomic comparison☆16Apr 29, 2021Updated 4 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆40Dec 20, 2023Updated 2 years ago
- ☆22Jul 7, 2022Updated 3 years ago
- ☆16Oct 9, 2024Updated last year
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Sep 5, 2025Updated 5 months ago
- RelocaTE2☆18Oct 6, 2023Updated 2 years ago
- Domain based annotation of transposable elements☆21Oct 8, 2025Updated 4 months ago
- ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.☆25Dec 5, 2024Updated last year
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆20Jun 10, 2025Updated 8 months ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆20Updated this week
- SINE annotation tool for plant genomes☆18Jan 21, 2024Updated 2 years ago
- Create LocusZoom-style plots in R.☆22Mar 5, 2023Updated 2 years ago
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 5 years ago
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆47Nov 13, 2023Updated 2 years ago
- Bayesian Multi-Trait Multi-Environment for genomic selection[R package] [Dev version]☆19Aug 6, 2023Updated 2 years ago
- yaha: a flexible, sensitive and accurate DNA alignment tool designed to find optimal split-read mappings on single-end queries from 100bp…☆20Dec 6, 2017Updated 8 years ago
- DNA序列比对结果 可视化展示工具☆47Oct 10, 2021Updated 4 years ago
- Repository for code used for publications☆30Oct 20, 2025Updated 3 months ago
- ☆28Nov 22, 2020Updated 5 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆54Mar 7, 2025Updated 11 months ago
- Tools for improving the sensitivity and specificity of genome alignments☆58Jan 17, 2024Updated 2 years ago