Alternatives and similar repositories for GPWAS

Users that are interested in GPWAS are comparing it to the libraries listed below

• itojal / hot_scan
  hot_scan is a free software to detect genomic regions unusually rich (hotspot) in a given pattern via scan statistics
  ☆7Updated 11 years ago
• baoxingsong / dCNS
  conserved non-coding sequence
  ☆14Updated 3 years ago
• guokai8 / CandiHap
  Build haplotye and generate figures
  ☆18Updated 3 years ago
• yiliao1022 / LASTZ_SV_pipeline
  ☆15Updated 5 years ago
• glogsdon1 / sunk-based_assembly
  ☆15Updated 4 years ago
• LeanQ / SPLITREADER
  Split-read pipeline for the identification of non-reference TE insertions with TSDs
  ☆25Updated 4 years ago
• wheatgenetics / owwc
  repository for code used in analysis of open wild wheat consortium
  ☆16Updated 3 years ago
• GaoLei-bio / SV
  ☆14Updated 3 years ago
• xhhuanglab / QTN_scripts
  ☆9Updated 4 years ago
• malonge / CallSV
  A long-read SV calling pipeline
  ☆12Updated 3 years ago
• baduelp / public
  ☆16Updated 7 months ago
• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆29Updated 2 years ago
• AI-sandbox / archetypal-analysis
  ☆13Updated last year
• tpook92 / HaploBlocker
  R-package: Calculation of haplotype blocks and libraries
  ☆30Updated 2 months ago
• weigelworld / pan-nlrome
  The GitHub repository for the A. thaliana pan-NLR'ome project.
  ☆16Updated 5 years ago
• biozzq / goat-population-genetic
  Main scripts and commands used to analyze goat population genetic and domestication
  ☆20Updated 6 years ago
• caulilin / QTG_Seq
  ☆21Updated 6 years ago
• Atvar2 / plotHicGenome
  The tools are used for displaying hic signal of genome
  ☆23Updated 4 years ago
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated last month
• dawelab / Ab10-Assembly
  B73Ab10 genome assembly methods
  ☆16Updated 3 years ago
• xuzhougeng / wgap
  Whole Genome Annotation Pipeline
  ☆17Updated last year
• evodify / allele-specific-expression
  Pipeline to perform the allele-specific expression analysis (based on the work by Skelly et al. 2011)
  ☆11Updated 6 years ago
• andreaminio / HaploSync
  Tools for haplotype-wise reconstruction of pseudomolecules
  ☆20Updated 7 months ago
• mattravenhall / SV-Pop
  Upscaling SV detection to a multi-population level.
  ☆22Updated 4 years ago
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 7 years ago
• Wendellab / CisTransRegulation
  Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum
  ☆16Updated last year
• xukaili / CandiHap
  A haplotype analysis toolkit for natural variation study.
  ☆30Updated last year
• LAILAB-CAU / update-Mo17
  ☆24Updated 2 years ago
• BGI-shenzhen / RRSelection
  RRSelection: A linkage disequilibrium method to detect selection region across population VCF
  ☆14Updated 6 years ago
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆38Updated 3 years ago