Alternatives and similar repositories for GPWAS

Users that are interested in GPWAS are comparing it to the libraries listed below

• baduelp / public
  ☆16Updated 11 months ago
• baoxingsong / dCNS
  conserved non-coding sequence
  ☆14Updated 3 years ago
• wheatgenetics / owwc
  repository for code used in analysis of open wild wheat consortium
  ☆17Updated 3 years ago
• amvarani / Plant_Annotation_TEs
  Methods and recipes for Plant Genome Annotation - Transposable Elements
  ☆20Updated 3 months ago
• yiliao1022 / LASTZ_SV_pipeline
  ☆16Updated 5 years ago
• JBerthelier / ParasiTE
  Invertory of TE-gene isoforms
  ☆13Updated 2 years ago
• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆29Updated 2 years ago
• malonge / CallSV
  A long-read SV calling pipeline
  ☆12Updated 4 years ago
• tpook92 / HaploBlocker
  R-package: Calculation of haplotype blocks and libraries
  ☆33Updated 2 months ago
• schneebergerlab / GameteBinning_tetraploid
  This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings
  ☆12Updated 3 years ago
• dawelab / Ab10-Assembly
  B73Ab10 genome assembly methods
  ☆17Updated 3 years ago
• 4ureliek / TEorthology
  Script to help assessing the evolutionary history of a TE family
  ☆16Updated 6 years ago
• andreaminio / HaploSync
  Tools for haplotype-wise reconstruction of pseudomolecules
  ☆21Updated 3 weeks ago
• vgteam / sv-genotyping-paper
  ☆31Updated 5 years ago
• caulai / Mo17_genome_assembly
  ☆14Updated 6 years ago
• ryought / hic_hiker
  HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C
  ☆26Updated 4 years ago
• AI-sandbox / archetypal-analysis
  ☆13Updated last year
• xukaili / CandiHap
  A haplotype analysis toolkit for natural variation study.
  ☆30Updated last year
• glogsdon1 / sunk-based_assembly
  ☆16Updated 4 years ago
• BGI-shenzhen / RRSelection
  RRSelection: A linkage disequilibrium method to detect selection region across population VCF
  ☆14Updated 6 years ago
• wangzihell / CAU-TibetanWheatSeq
  Customized codes used in Tibetan wheat sequencing project.
  ☆13Updated 2 years ago
• LeanQ / SPLITREADER
  Split-read pipeline for the identification of non-reference TE insertions with TSDs
  ☆25Updated 5 years ago
• shingocat / syntenyPlotByR
  plot genome alignment synteny
  ☆21Updated 5 years ago
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 7 years ago
• vgteam / giraffe-sv-paper
  ☆42Updated last year
• jydu / maffilter
  The MafFilter genome alignment processor
  ☆19Updated 4 months ago
• yilinZhang-bio / Watermelon-pangenome
  ☆24Updated last year
• AnimalGenomicsETH / bovine-graphs
  Integrate multiple genome assemblies into a pangenome graph
  ☆34Updated 3 years ago
• zstephens / telogator
  A method for measuring chromosome-specific telomere length from long reads
  ☆22Updated last year
• oushujun / MTEC
  A repo contains historical and updated MTEC libraries.
  ☆18Updated 5 years ago