Alternatives and similar repositories for SVJedi-graph

Users that are interested in SVJedi-graph are comparing it to the libraries listed below

• KolmogorovLab / hapdiff
  SV calling for diploid assemblies
  ☆28Updated last year
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆26Updated 2 months ago
• mrvollger / NucFreq
  ☆37Updated last year
• schatzlab / pseudohaploid
  Create a pseudohaploid assembly from a partially resolved diploid assembly
  ☆32Updated 5 years ago
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆29Updated 3 years ago
• AnimalGenomicsETH / bovine-graphs
  Integrate multiple genome assemblies into a pangenome graph
  ☆35Updated 3 years ago
• mikolmogorov / maf2synteny
  A tool for recovering synteny blocks from multiple alignment
  ☆30Updated 3 years ago
• vpc-ccg / sedef
  Identification of segmental duplications in the genome
  ☆27Updated 3 years ago
• clemgoub / rm2gff3
  Convert RepeatMasker ".out" file into a gff3 with colors!!!
  ☆21Updated 5 years ago
• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆31Updated 2 years ago
• vgteam / sv-genotyping-paper
  ☆31Updated 5 years ago
• davidebolo1993 / cosigt
  ☆20Updated last week
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 7 years ago
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆31Updated 4 years ago
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆22Updated 3 years ago
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆46Updated 4 years ago
• slimsuite / chromsyn
  Chromosome-level synteny plotting using orthologous regions
  ☆29Updated 11 months ago
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆27Updated 11 months ago
• baozg / phased-assembly-check
  ☆30Updated 7 months ago
• moold / paf2dotplot
  Draw a dot plot from a paf alignment
  ☆34Updated last week
• bcgsc / ntSynt-viz
  Multi-genome synteny block visualization tool
  ☆43Updated 7 months ago
• compbiol / CAMSA
  CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
  ☆24Updated 5 years ago
• Markusjsommer / TD2
  TD2
  ☆15Updated 2 months ago
• vgteam / giraffe-sv-paper
  ☆42Updated last year
• maxfieldk / TE-Seq
  Snakemake pipeline to analyze transposable element 'omics data.
  ☆27Updated last week
• human-pangenomics / hprc-tutorials
  ☆17Updated last year
• Farre-lab / syntenyPlotteR
  R package to draw syntenic plots in 3 different styles
  ☆42Updated this week
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆32Updated last year
• pangenome / PanSN-spec
  Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes
  ☆39Updated 10 months ago
• SamueleSoraggi / HMMploidy
  A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models
  ☆18Updated 2 years ago