Alternatives and similar repositories for SVJedi-graph

Users that are interested in SVJedi-graph are comparing it to the libraries listed below

• at-cg / RAFT
  ☆23Updated 9 months ago
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆26Updated 11 months ago
• Markusjsommer / TD2
  TD2
  ☆12Updated this week
• almeidasilvaf / doubletrouble
  An R package to identify and classify duplicated genes from whole-genome protein sequence data
  ☆26Updated 2 months ago
• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆30Updated 2 years ago
• KolmogorovLab / hapdiff
  SV calling for diploid assemblies
  ☆27Updated last year
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 3 years ago
• davidebolo1993 / cosigt
  ☆19Updated last week
• kavonrtep / dante_ltr
  ☆10Updated 2 weeks ago
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆23Updated 3 years ago
• kavonrtep / dante
  Domain based annotation of transposable elements
  ☆19Updated 3 weeks ago
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆27Updated 3 years ago
• clemgoub / rm2gff3
  Convert RepeatMasker ".out" file into a gff3 with colors!!!
  ☆21Updated 4 years ago
• vgteam / sv-genotyping-paper
  ☆30Updated 5 years ago
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 7 years ago
• human-pangenomics / hprc-tutorials
  ☆17Updated last year
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆28Updated 8 months ago
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆19Updated 7 months ago
• moold / paf2dotplot
  Draw a dot plot from a paf alignment
  ☆29Updated last month
• cmdoret / tinycov
  Command line tool to plot genomic coverage from a BAM file
  ☆13Updated 2 years ago
• A-J-F-Mackintosh / syngraph
  Toolkit for evolutionary analyses of linkage groups
  ☆31Updated 10 months ago
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆30Updated 3 years ago
• DessimozLab / OMAnnotator
  Consensus genome annotation using OMA
  ☆24Updated last month
• esrice / hic-pipeline
  A pipeline for scaffolding a genome assembly using Hi-C
  ☆13Updated 2 years ago
• c-zhou / polyGembler
  ☆16Updated 2 years ago
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆32Updated last year
• bcgsc / ntSynt-viz
  Multi-genome synteny block visualization tool
  ☆41Updated 4 months ago
• mrvollger / NucFreq
  ☆35Updated last year
• WarrenLab / chicken-pangenome-paper
  Scripts used to perform analyses in Rice et al. (2023)
  ☆15Updated last year
• ERGA-consortium / pipelines
  ☆16Updated this week