johanzi / gwas_gemmaLinks
Perform GWAS with gemma in a simple pipeline
☆27Updated 9 months ago
Alternatives and similar repositories for gwas_gemma
Users that are interested in gwas_gemma are comparing it to the libraries listed below
Sorting:
- Pipeline to perform the allele-specific expression analysis (based on the work by Skelly et al. 2011)☆12Updated 8 months ago
- ☆23Updated 7 years ago
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆39Updated 10 months ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Updated 6 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆44Updated 6 years ago
- Transposable element polymorphism identification☆34Updated 5 years ago
- scripts for the project of seven thaliana genomes assembly☆42Updated 4 years ago
- De novo annotation of young retrotransposons☆47Updated 3 years ago
- Codes for the lettuce resequencing project in 2020☆30Updated 4 years ago
- QTL mapping with binmap data☆18Updated 6 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆17Updated 2 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Updated 7 years ago
- scripts and intermediate files used to annotate TEs in Jiao et al.☆34Updated 7 years ago
- ☆14Updated 3 years ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆56Updated 3 weeks ago
- A haplotype analysis toolkit for natural variation study.☆31Updated 2 years ago
- Scripts and procedures for detecting positively selected genes and codons in primates☆22Updated 5 years ago
- Upscaling SV detection to a multi-population level.☆22Updated 6 months ago
- Bulked-Segregant Analysis using vcf file with or without parents☆32Updated last year
- Plant small RNA target prediction tool☆27Updated 9 years ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆29Updated 6 years ago
- Scripts for NGS processing☆17Updated 8 years ago
- A repo contains historical and updated MTEC libraries.☆18Updated 6 years ago
- Scripts and other material for the assembly and analysis of ratite genomes.☆27Updated 3 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 10 months ago
- ☆11Updated 3 years ago
- ☆29Updated 2 years ago
- The repository for codes developed to generated the Maize NC358 assemblies and analyses.☆10Updated 5 years ago
- ☆12Updated 4 years ago