oeco28 / Cacao_GenomicsLinks
This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomes
☆11Updated 6 years ago
Alternatives and similar repositories for Cacao_Genomics
Users that are interested in Cacao_Genomics are comparing it to the libraries listed below
Sorting:
- Main scripts and commands used to analyze goat population genetic and domestication☆20Updated 6 years ago
- Killifish genomics scripts☆12Updated 4 years ago
- Set of script for the paper on the cattle graph genome☆13Updated 2 years ago
- Some useful bioinformatics pipelines for genomics analysis☆14Updated 4 years ago
- Set of scripts to manupulate tab-delimited genotype calls files as well as to convert calls-files to other popular formats.☆10Updated 4 years ago
- issues for semina "Data Visulization"☆13Updated last week
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Updated 5 years ago
- ☆12Updated 3 months ago
- ☆15Updated 5 years ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- ☆14Updated 3 years ago
- ☆15Updated last year
- Study of TE evolution in a population of genomes☆9Updated last year
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆17Updated 6 years ago
- Long Read Based SV Calling Tools Analysis☆13Updated last year
- Construct and Analyze the North American Vitis pangenome☆23Updated last year
- ☆15Updated last year
- A collection of scripts I wrote when doing population genetics: calculate GC content, perform the McDonald-Kreitman test, calculate Tajim…☆9Updated last year
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 6 years ago
- repository for code used in analysis of open wild wheat consortium☆16Updated 3 years ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- parallelLastz: Running Lastz in parallel☆16Updated 8 months ago
- ☆15Updated 4 years ago
- Assemble and following pipeline used in wisent genome paper.☆17Updated 8 years ago
- ☆9Updated 4 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- B73Ab10 genome assembly methods☆16Updated 3 years ago
- hot_scan is a free software to detect genomic regions unusually rich (hotspot) in a given pattern via scan statistics☆7Updated 11 years ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Updated 8 years ago
- Build haplotye and generate figures☆18Updated 3 years ago