lauterbur / Flex-sweepLinks
Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.
☆15Updated last year
Alternatives and similar repositories for Flex-sweep
Users that are interested in Flex-sweep are comparing it to the libraries listed below
Sorting:
- The MafFilter genome alignment processor☆19Updated 5 months ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Updated 7 years ago
- Homologizer: phasing gene copies into polyploid subgenomes☆10Updated 3 years ago
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆13Updated 4 years ago
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆20Updated last month
- A long-read SV calling pipeline☆12Updated 4 years ago
- ☆14Updated 2 years ago
- Consensus genome annotation using OMA☆27Updated 4 months ago
- ASTRAL for PaRalogs and Orthologs☆21Updated 3 years ago
- ☆12Updated 4 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 7 months ago
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Updated last year
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Updated 6 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Updated last month
- ☆28Updated last year
- convert a multi-sample VCF file to a multiple sequence alignment (C)☆14Updated 6 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated last month
- ☆15Updated 5 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆25Updated last week
- ☆11Updated 2 years ago
- chloroplast genome assembly using long reads data☆13Updated 3 months ago
- Process linked-read data, from raw sequences to phased haplotypes, batteries included. Works with WGS too!☆18Updated this week
- Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes☆10Updated last year
- De-novo Assembly Structural Variant Caller☆13Updated 9 years ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Updated last year
- Merging assemblies by using adjacency algebraic model and classification☆22Updated 2 years ago
- A procedure to find Fst outliers based on an inferred distribution of neutral Fst☆19Updated 6 years ago
- Script to help assessing the evolutionary history of a TE family☆16Updated 6 years ago