lauterbur / Flex-sweepLinks
Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.
☆15Updated last year
Alternatives and similar repositories for Flex-sweep
Users that are interested in Flex-sweep are comparing it to the libraries listed below
Sorting:
- Ascertained Sequentially Markovian Coalescent☆16Updated 7 months ago
- The MafFilter genome alignment processor☆19Updated 2 months ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Updated 6 years ago
- Homologizer: phasing gene copies into polyploid subgenomes☆10Updated 2 years ago
- Infer the age of ancestral nodes in a tree sequence.☆21Updated last month
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆13Updated 4 years ago
- Convert HAL to VG☆22Updated 11 months ago
- R-package: Calculation of haplotype blocks and libraries☆31Updated 4 months ago
- ☆11Updated 2 years ago
- ☆14Updated 2 years ago
- ☆13Updated this week
- Consensus genome annotation using OMA☆26Updated 3 weeks ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- ☆26Updated 3 years ago
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 7 months ago
- Sweep Inference Framework (controlling for correlation)☆29Updated last year
- De-novo Assembly Structural Variant Caller☆13Updated 8 years ago
- ☆14Updated last year
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆12Updated 3 years ago
- ☆12Updated 4 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆19Updated last week
- Merging assemblies by using adjacency algebraic model and classification☆23Updated 2 years ago
- Statistical analysis of gene family evolution using phylogenetic birth-death processes and WGD inference using rjMCMC☆9Updated 4 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 2 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆20Updated 9 months ago
- Demographic inference from whole genomes☆13Updated 2 years ago
- Automated and distributed population genetic model inference from allele frequency spectra☆17Updated 3 months ago
- A long-read SV calling pipeline☆12Updated 3 years ago