lauterbur / Flex-sweepLinks
Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.
☆15Updated last year
Alternatives and similar repositories for Flex-sweep
Users that are interested in Flex-sweep are comparing it to the libraries listed below
Sorting:
- The MafFilter genome alignment processor☆19Updated this week
- Homologizer: phasing gene copies into polyploid subgenomes☆11Updated 3 years ago
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆20Updated 3 months ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Updated 7 years ago
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆13Updated 4 years ago
- ☆12Updated 2 years ago
- Consensus genome annotation using OMA☆31Updated 6 months ago
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Updated last year
- A long-read SV calling pipeline☆12Updated 4 years ago
- ASTRAL for PaRalogs and Orthologs☆22Updated 3 years ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Updated last year
- ☆12Updated 5 years ago
- Ascertained Sequentially Markovian Coalescent☆16Updated 2 months ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Updated 4 months ago
- An efficient tool for cross-population fixation index estimation on variant call format files☆10Updated last year
- ☆15Updated 2 years ago
- chloroplast genome assembly using long reads data☆13Updated 6 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- machine learning applications for dadi☆16Updated 11 months ago
- ☆14Updated last year
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆16Updated 9 months ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆27Updated 3 months ago
- Process linked-read data, from raw sequences to phased haplotypes, batteries included. Works with WGS too!☆18Updated this week
- Scripts to do haplotype analysis on pan genomes.☆20Updated 5 years ago
- Computational Analysis of Gene Expression Evolution☆45Updated 4 months ago
- Haplotype and population structure inference using neural networks.☆27Updated last year
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆20Updated 7 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 10 months ago
- ☆15Updated last year
- An R package for comparative transcriptomic analyses of hybrids and their progenitors☆14Updated last year