rdemolgen / SavvySuiteLinks
Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes
☆29Updated last year
Alternatives and similar repositories for SavvySuite
Users that are interested in SavvySuite are comparing it to the libraries listed below
Sorting:
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Population-wide Deletion Calling☆35Updated 3 months ago
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Updated 5 years ago
- Structural variant (SV) analysis tools☆36Updated last year
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆57Updated 3 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 4 months ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆25Updated 2 months ago
- ☆35Updated 4 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 4 years ago
- A variant caller for the GBA gene using WGS data☆22Updated 11 months ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- Structural Variant Prediction Viewer☆34Updated 7 years ago
- CNV detection tool for targeted NGS panel data☆16Updated 3 years ago
- Sample Contamination Estimate from VCF☆19Updated 8 months ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago
- ☆42Updated 10 months ago
- Immuological gene typing and annotation for genome assembly☆37Updated 4 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Structural variant caller☆54Updated 3 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆40Updated last month
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- A new tool to infer sex from massively parallel sequencing data.☆17Updated 2 months ago
- v2.x of the microassembly based somatic variant caller☆24Updated last month
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 4 months ago