pachterlab / kallisto-sleuth-workshop-2016
materials and website for the 2016 kallisto sleuth workshop
☆11Updated 8 years ago
Alternatives and similar repositories for kallisto-sleuth-workshop-2016:
Users that are interested in kallisto-sleuth-workshop-2016 are comparing it to the libraries listed below
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 7 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated last year
- ☆22Updated 5 months ago
- TOP results by CONfident efFECT Sizes.☆14Updated last month
- An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)☆16Updated 12 years ago
- Examples of kallisto + sleuth☆11Updated 7 years ago
- Interactive eQTL visualizations☆13Updated 2 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- Personal diploid genome creation and coordinate conversion☆22Updated 3 months ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 7 months ago
- Benchmarks for RNA-seq quantification pipelines☆8Updated 4 years ago
- ☆12Updated 5 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 6 years ago
- ☆15Updated last year
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Updated 6 years ago
- R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)☆10Updated 4 years ago
- Teaching modules for Human Genome Variation Lab.☆19Updated 5 months ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- ☆23Updated 5 years ago
- Allele frequency filter app☆14Updated 2 years ago
- Two locus likelihoods and ARGs under changing population size☆13Updated 3 years ago
- Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)☆14Updated 2 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- R package to quickly obtain count vectors from indexed bam files☆14Updated 3 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 5 months ago
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Updated 2 years ago
- ☆18Updated 9 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 3 years ago
- Effective Computing—Resources for Computational Biologists☆25Updated 4 years ago