pachterlab / kallisto-sleuth-workshop-2016Links
materials and website for the 2016 kallisto sleuth workshop
☆11Updated 8 years ago
Alternatives and similar repositories for kallisto-sleuth-workshop-2016
Users that are interested in kallisto-sleuth-workshop-2016 are comparing it to the libraries listed below
Sorting:
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)☆10Updated 5 years ago
- CLI to automate Nextflow pipeline testing☆12Updated last week
- An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)☆16Updated 13 years ago
- Machine learning use cases for teaching☆13Updated 8 years ago
- Teaching modules for Human Genome Variation Lab.☆20Updated 4 months ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- TOP results by CONfident efFECT Sizes.☆14Updated 10 months ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 7 years ago
- Interactive eQTL visualizations☆13Updated 2 years ago
- ☆23Updated last month
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 6 years ago
- Data management of large-scale whole-genome sequence variant calls using GDS files (Development version only)☆46Updated last week
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆24Updated 4 years ago
- ☆10Updated 6 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Updated 4 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- ☆18Updated 9 years ago
- ☆13Updated 9 years ago
- ☆16Updated 8 years ago
- Allele frequency filter app☆14Updated 3 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 7 years ago
- Targeted and non-targeted anticancer drugs and drug regimens☆29Updated 2 weeks ago
- Generate HTML report for a set of genomic regions or DESeq2/edgeR results☆10Updated 9 months ago
- Unfazed by genomic variant phasing☆27Updated last year
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- mitochondrial variant analysis tools☆15Updated 4 years ago
- Bedfile perturbation tool☆17Updated last month
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 7 years ago