pachterlab / kallisto-sleuth-workshop-2016
materials and website for the 2016 kallisto sleuth workshop
☆11Updated 8 years ago
Alternatives and similar repositories for kallisto-sleuth-workshop-2016:
Users that are interested in kallisto-sleuth-workshop-2016 are comparing it to the libraries listed below
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)☆16Updated 12 years ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 7 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated last year
- ☆22Updated 3 weeks ago
- ☆12Updated 5 years ago
- Benchmarks for RNA-seq quantification pipelines☆8Updated 5 years ago
- TOP results by CONfident efFECT Sizes.☆14Updated 3 months ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 10 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Updated 5 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 9 months ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 3 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- ☆10Updated 9 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data☆13Updated this week
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 9 months ago
- Allele frequency filter app☆14Updated 2 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- A tool for Read Multi-Mapper Resolution☆23Updated 8 years ago
- ☆11Updated last year
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Updated 6 years ago
- R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)☆10Updated 4 years ago
- 📊 An R package of RNA-seq workflow☆16Updated 2 years ago
- NHC: A computational approach to detect physiological homogeneity in the midst of genetic heterogeneity☆10Updated last year
- a set of NGS pipelines☆24Updated 2 weeks ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆17Updated 6 years ago