IARCbioinfo / alignment-nf
Whole Exome/Whole Genome Sequencing alignment pipeline
☆26Updated this week
Related projects: ⓘ
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 2 years ago
- Find Unique genomic Regions☆29Updated 2 weeks ago
- Population-wide Deletion Calling☆34Updated 2 weeks ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆43Updated 2 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆23Updated last year
- A collection of modules and sub-workflows for Nextflow☆25Updated this week
- Exact Tandem Repeat Finder (not a TRF replacement)☆45Updated 4 years ago
- Nextflow implementation of the GATK HaplotypeCaller pipeline☆12Updated 6 months ago
- Trimming tool for Oxford Nanopore sequence data☆22Updated 3 years ago
- Adapters for trimming☆30Updated 5 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated last year
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- Simplify snpEff annotations for interesting cases☆21Updated 5 years ago
- PopSTR - A Population based microsatellite genotyper☆31Updated 10 months ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 4 years ago
- ☆23Updated 5 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆59Updated 4 years ago
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆20Updated 3 weeks ago
- Pipeline for structural variant image curation and analysis.☆48Updated 2 years ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆14Updated 6 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 5 years ago
- Splice junction analysis and filtering from BAM files☆37Updated 2 years ago
- Nextflow workflow for automatic repeat detection, classification and masking☆13Updated 6 years ago
- ☆51Updated 5 years ago
- full taxonomer cython repository☆22Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆38Updated 4 years ago
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- OPAL: Open-community Profiling Assessment tooL☆26Updated 3 weeks ago
- Location of public benchmarking; primarily final results☆18Updated 2 years ago