IARCbioinfo / alignment-nf
Whole Exome/Whole Genome Sequencing alignment pipeline
☆28Updated 2 months ago
Related projects ⓘ
Alternatives and complementary repositories for alignment-nf
- Find Unique genomic Regions☆29Updated this week
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 4 years ago
- Python package and routines for merging VCF files☆29Updated 3 years ago
- Master of Pores 2☆23Updated last year
- Population-wide Deletion Calling☆35Updated 2 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 2 years ago
- Minor Variant Calling and Phasing Tools☆15Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆45Updated 5 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆43Updated 2 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- Adapters for trimming☆30Updated 5 years ago
- POSTRE: Prediction Of STRuctural variant Effects☆21Updated 2 months ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆29Updated last year
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 2 years ago
- Remove lambda phage reads from a fastq file☆28Updated last year
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 5 years ago
- ThermoAlign: software for automated primer design☆25Updated 6 years ago
- A collection of modules and sub-workflows for Nextflow☆26Updated this week
- A method of assessing sequence complexity based on kmer frequencies☆28Updated 6 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆31Updated 3 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated last year
- Deep learning-based structural variant filtering method☆35Updated last year
- Digenome-toolkit ver2.☆15Updated 3 years ago
- catalog for long-read sequencing tools☆32Updated last year
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆45Updated this week
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago