IARCbioinfo / alignment-nfLinks
Whole Exome/Whole Genome Sequencing alignment pipeline
☆28Updated 8 months ago
Alternatives and similar repositories for alignment-nf
Users that are interested in alignment-nf are comparing it to the libraries listed below
Sorting:
- A collection of modules and sub-workflows for Nextflow☆26Updated this week
- Find Unique genomic Regions☆29Updated 2 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Population-wide Deletion Calling☆35Updated last month
- Master of Pores 2☆23Updated 6 months ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆23Updated 9 months ago
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- Trimming tool for Oxford Nanopore sequence data☆21Updated 3 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆42Updated last year
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- compare sequences to a shared root reference sequence.☆24Updated 3 years ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- Structural variant (SV) analysis tools☆36Updated 11 months ago
- ☆27Updated 3 years ago
- Generate unique KMERs for every contig in a FASTA file☆48Updated 2 years ago
- An insertion caller for Illumina paired-end WGS data.☆23Updated 10 months ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- Whole Genome Sequenceing Structural Variation Pipelines☆16Updated 6 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Digenome-toolkit ver2.☆16Updated 3 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago