Whole Exome/Whole Genome Sequencing alignment pipeline
☆30Sep 18, 2024Updated last year
Alternatives and similar repositories for alignment-nf
Users that are interested in alignment-nf are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Mutation Spectra Analysis☆10Mar 15, 2018Updated 8 years ago
- Multi-sample somatic variant caller☆52Jan 27, 2022Updated 4 years ago
- List of IARC bioinformatics pipelines and resources☆56Updated this week
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Jul 21, 2019Updated 6 years ago
- Luslab nextflow modules☆14Apr 30, 2021Updated 4 years ago
- UMCU Genetics Nextflow modules☆30Oct 25, 2024Updated last year
- Nextflow implementation of the smoove workflow and other tools for SV calling and QC☆12Nov 12, 2020Updated 5 years ago
- ☆10May 14, 2025Updated 10 months ago
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Dec 31, 2025Updated 2 months ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆16Oct 11, 2023Updated 2 years ago
- Clinical Whole Genome and Exome Sequencing Pipeline☆30Oct 27, 2025Updated 4 months ago
- Query language for filtering SAM/BAM reads☆31Oct 15, 2024Updated last year
- Viral Identification and Discovery - A viral characterization pipeline built in Nextflow.☆11May 19, 2020Updated 5 years ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆32Nov 14, 2025Updated 4 months ago
- This pipeline has moved! Please see:☆11Mar 12, 2018Updated 8 years ago
- A collection of modules and sub-workflows for Nextflow☆28Feb 13, 2026Updated last month
- Metagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical bi…☆18Sep 1, 2023Updated 2 years ago
- The D4 Quantitative Data Format☆169Nov 28, 2025Updated 3 months ago
- Real-time species-typing visualisation for nanopore data.☆13Apr 11, 2023Updated 2 years ago
- Aligner for sequencing data☆18Feb 13, 2018Updated 8 years ago
- G2P is an integrated genomic selection (GS) package for predicting phenotypes from genotypes. It includes 15 GS algorithms and 13 evaluat…☆17Sep 27, 2017Updated 8 years ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Dec 3, 2017Updated 8 years ago
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Jun 30, 2020Updated 5 years ago
- 3DGB is a workflow to build 3D models of genomes from HiC data☆13Jan 26, 2026Updated last month
- Structural variant (SV) analysis tools☆41Jul 1, 2024Updated last year
- A nextflow pipeline for calling exome CNVs☆13Feb 24, 2026Updated last month
- ☆22Jul 7, 2022Updated 3 years ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆33Aug 9, 2022Updated 3 years ago
- A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools☆23Jun 3, 2018Updated 7 years ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Jul 2, 2020Updated 5 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Feb 17, 2022Updated 4 years ago
- DeepMP is a computational tool to detect DNA modifications in Nanopore sequencing data☆27Mar 18, 2022Updated 4 years ago
- SaffronTree: Reference free rapid phylogenetic tree construction from raw read data☆25Jun 11, 2020Updated 5 years ago
- Python deployment tool for bespoke image curation projects, oriented toward scientific projects. Please cite https://academic.oup.com/gig…☆14Aug 6, 2022Updated 3 years ago
- ☆13Jun 21, 2017Updated 8 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- Nextflow implementation of the GATK HaplotypeCaller pipeline☆13Dec 27, 2025Updated 2 months ago
- ☆10Apr 20, 2018Updated 7 years ago