evodify / allele-specific-expression
Pipeline to perform the allele-specific expression analysis (based on the work by Skelly et al. 2011)
☆11Updated 6 years ago
Alternatives and similar repositories for allele-specific-expression:
Users that are interested in allele-specific-expression are comparing it to the libraries listed below
- Genome-wide scan for balancing selection using beta statistic☆28Updated last year
- Perform GWAS with gemma in a simple pipeline☆25Updated 2 years ago
- Transposable element polymorphism identification☆33Updated 4 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 4 years ago
- Killifish genomics scripts☆12Updated 4 years ago
- The repository for codes developed to generated the Maize NC358 assemblies and analyses.☆11Updated 4 years ago
- ☆24Updated 7 years ago
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆16Updated last year
- Pipelines and scripts for analysing RNA-seq，genome and other sequecing data.☆9Updated 5 years ago
- This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomes☆11Updated 6 years ago
- Main scripts and commands used to analyze goat population genetic and domestication☆20Updated 6 years ago
- A box of genomics tools☆21Updated 4 years ago
- Set of scripts to manupulate tab-delimited genotype calls files as well as to convert calls-files to other popular formats.☆10Updated 4 years ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- ☆21Updated 6 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 3 months ago
- QTL mapping with binmap data☆17Updated 5 years ago
- ☆17Updated 9 years ago
- Pipeline to phase a genome into two homeologous subgenomes. Parental genomes are required.☆9Updated 6 years ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- A repo contains historical and updated MTEC libraries.☆17Updated 5 years ago
- Working on cotton resequencing☆11Updated 4 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 7 years ago
- ☆14Updated 3 years ago
- A pipeline for scaffolding a genome assembly using Hi-C☆13Updated 2 years ago
- Repository for the 2017 Genome Biology publication, "The interplay of demography and selection during maize domestication and expansion"☆17Updated 4 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 5 years ago
- ☆20Updated 4 years ago
- Utilities for analyzing next generation sequencing data☆17Updated 6 years ago
- Make Pseudo-Reference Genome from VCF/BCF☆14Updated 4 years ago