Pipeline to perform the allele-specific expression analysis (based on the work by Skelly et al. 2011)
☆12May 22, 2025Updated last year
Alternatives and similar repositories for allele-specific-expression
Users that are interested in allele-specific-expression are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pipeline to phase a genome into two homeologous subgenomes. Parental genomes are required.☆10May 22, 2025Updated last year
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆18Dec 19, 2023Updated 2 years ago
- Demographic analysis of Brassica oleracea☆10May 1, 2026Updated 3 weeks ago
- Code for the Brassica oleracea/rapa/napus genomic comparison☆16Apr 29, 2021Updated 5 years ago
- Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)☆19Nov 29, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- The repository for codes developed to generated the Maize NC358 assemblies and analyses.☆10Apr 23, 2020Updated 6 years ago
- Counts the number of reads which map to either the reference or alternate allele at each heterozygous SNP.☆26Sep 21, 2018Updated 7 years ago
- Scripts and resources for the haploblocks manuscript☆18Mar 20, 2020Updated 6 years ago
- ☆15Nov 11, 2019Updated 6 years ago
- ☆24Jun 9, 2017Updated 8 years ago
- Scripts and other material for the assembly and analysis of ratite genomes.☆27Jan 18, 2023Updated 3 years ago
- ☆11Sep 1, 2022Updated 3 years ago
- A deep learning research platform that recognizes stock charts through Convolutional Neural Network (CNN).☆21Jul 7, 2016Updated 9 years ago
- I often use some of the self-written programs.☆16May 13, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Simple tool for capturing alignment regions with sufficient quality for genotyping.☆23Aug 20, 2021Updated 4 years ago
- personal genome constructor☆11May 29, 2025Updated 11 months ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Feb 17, 2026Updated 3 months ago
- ☆11Jun 26, 2020Updated 5 years ago
- Explore ploidy levels from NGS data alone☆44Jan 19, 2023Updated 3 years ago
- Repository for the 2017 Genome Biology publication, "The interplay of demography and selection during maize domestication and expansion"☆17Nov 24, 2020Updated 5 years ago
- Quantitative Allele Specific Analysis of Reads. Joint genotyping & ASE inference for RNA-seq data☆28Feb 4, 2017Updated 9 years ago
- ☆17Nov 26, 2023Updated 2 years ago
- materials and website for the 2016 kallisto sleuth workshop☆11Nov 7, 2016Updated 9 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Galaxy tools and wrappers for sequence analysis☆17Jun 11, 2024Updated last year
- Perform GWAS with gemma in a simple pipeline☆27Apr 26, 2025Updated last year
- ☆12Nov 23, 2020Updated 5 years ago
- Structure variants calling and genotyping scripts for pan-Zea☆22Nov 17, 2022Updated 3 years ago
- An R package to detect, classify, and visualize genome rearrangements☆15Aug 4, 2020Updated 5 years ago
- A mirror of https://bitbucket.org/weischen/pcawg-delly-workflow☆18Jan 22, 2020Updated 6 years ago
- faster haplotype-based admixture inference and dating software☆11Nov 25, 2025Updated 5 months ago
- Repository for pipeline code☆26Feb 28, 2024Updated 2 years ago
- A python parser to simplify and build the VCF (Variant Call Format).☆49Oct 30, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- PhyloSD: Phylogenomic Subgenome Detection pipeline☆11Jun 24, 2022Updated 3 years ago
- ☆46Jul 6, 2017Updated 8 years ago
- ☆23Oct 30, 2022Updated 3 years ago
- ☆22Jul 7, 2022Updated 3 years ago
- Enabling differential allele-specific analysis☆11Dec 28, 2024Updated last year
- The Simple Fool's Guide to population genomics using RNA-Seq☆28Jul 8, 2016Updated 9 years ago
- MODAS: Multi-Omics Data Association Study toolkit☆21Nov 21, 2024Updated last year