bcbio / bcbio_validation_workflowsLinks
A community menagarie of automated variant validations using bcbio and the Common Workflow Language
β21Updated 4 years ago
Alternatives and similar repositories for bcbio_validation_workflows
Users that are interested in bcbio_validation_workflows are comparing it to the libraries listed below
Sorting:
- πEvaluating, filtering, comparing, and visualising VCFβ28Updated 2 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.β30Updated 4 years ago
- a Shiny/R application to view and annotate copy number variationsβ28Updated 2 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data setsβ38Updated 5 years ago
- A set of tools to annotate VCF files with expression and readcount dataβ30Updated last week
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq dataβ42Updated 3 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing readsβ31Updated 2 years ago
- Prepare Sailfish and Salmon output for downstream analysisβ42Updated 6 years ago
- Portable WDL workflows for IDseq production pipelinesβ32Updated 4 years ago
- MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiersβ21Updated 8 years ago
- An automated RNA-seq pipeline using Nextflowβ37Updated last month
- A web based tool to manage and automate the processing of publicly available datasets.β39Updated 4 years ago
- DRAGEN Tumor/Normal workflow post-processingβ25Updated 2 years ago
- A webtool for the clinical interpretation of CNVs in rare disease patientsβ13Updated 3 years ago
- BigWig manpulation tools using libBigWig and htslibβ30Updated last year
- Filters for false-positive mutation calls in NGSβ34Updated 6 years ago
- Gene Fusion Visualiserβ51Updated 3 years ago
- This repository contains course materials from JAX-BD2K workshop.β32Updated 6 years ago
- Simplify snpEff annotations for interesting casesβ22Updated 6 years ago
- gnomAD browser pre-ASHG 2018β33Updated 5 years ago
- Automated human exome/genome variants detection from FASTQ filesβ23Updated 4 years ago
- Genomic VCF to tab-separated valuesβ48Updated 2 years ago
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.β14Updated 6 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signalsβ35Updated 4 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting veryβ¦β20Updated 6 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancerβ57Updated this week
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGSβ17Updated 6 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencingβ40Updated 4 years ago
- A Framework to call Structural Variants from NGS based datasetsβ22Updated 8 years ago
- Mapped QC analysis programβ43Updated 7 years ago