nccl-jmli / VarBenLinks
☆36Updated 4 years ago
Alternatives and similar repositories for VarBen
Users that are interested in VarBen are comparing it to the libraries listed below
Sorting:
- ☆43Updated last year
- ☆53Updated 2 years ago
- Helper scripts for biological data processing from Sentieon☆64Updated 3 weeks ago
- Microsatellite Analysis for Normal-Tumor InStability☆74Updated 3 years ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆111Updated 5 months ago
- A simplified pipeline for ctDNA sequencing data analysis☆37Updated 7 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- Gene fusion detection and visualization☆128Updated 3 years ago
- cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data☆71Updated 3 years ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆66Updated 2 years ago
- Microsatellite instability (MSI) detection for tumor only data.☆109Updated last year
- Characterization of Germline variants☆98Updated 3 years ago
- WisecondorX — An evolved WISECONDOR☆102Updated 3 weeks ago
- Reference data: BED files, genes, transcripts, variations.☆85Updated 7 years ago
- ☆57Updated 5 years ago
- R Package for Non Invasive Prenatal Testing (NIPT) analysis☆42Updated 5 years ago
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆57Updated 4 years ago
- An automatic classification tool for PVS1 interpretation of null variants☆36Updated last year
- microsatellite instability detection using tumor only or paired tumor-normal data☆132Updated 4 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆77Updated 5 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆50Updated 3 weeks ago
- Tumor Mutational Burden☆61Updated last month
- identifying mutational significance in cancer genomes☆61Updated 2 years ago
- WISECONDOR (WIthin-SamplE COpy Number aberration DetectOR): Detect fetal trisomies and smaller CNV's in a maternal plasma sample using wh…☆46Updated last year
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆72Updated last year
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆37Updated 3 years ago
- HLA typing for Sanger Based Test☆17Updated 2 years ago
- A standalone end-to-end data analysis pipeline for Duplex Sequencing☆20Updated last year
- Documenting usage and experience with bioinformatic tools☆40Updated 10 years ago