nccl-jmli / VarBen
☆35Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for VarBen
- ☆38Updated 9 months ago
- A simplified pipeline for ctDNA sequencing data analysis☆36Updated 7 years ago
- ☆50Updated last year
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆96Updated 2 years ago
- Helper scripts for biological data processing from Sentieon☆63Updated 3 weeks ago
- Microsatellite instability (MSI) detection for tumor only data.☆94Updated 6 months ago
- Fork of the Polysolver project☆30Updated 5 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆50Updated 4 years ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆18Updated 3 years ago
- Microsatellite Analysis for Normal-Tumor InStability☆69Updated 2 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆66Updated 2 months ago
- CNV screening and annotation tool☆24Updated 8 years ago
- ☆37Updated last year
- ☆103Updated last year
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆28Updated 6 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 9 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- A copy number caller for SMN1 and SMN2 to enable SMA diagnosis and carrier screening with WGS☆49Updated last year
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆76Updated 4 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆37Updated last month
- ☆24Updated 4 years ago
- WisecondorX — An evolved WISECONDOR☆94Updated 2 months ago
- ☆45Updated 5 years ago
- Concordance and contamination estimator for tumor–normal pairs☆56Updated last month
- HLA typing for Sanger Based Test☆17Updated last year
- ☆70Updated 6 months ago
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆22Updated last year
- QDNAseq package for Bioconductor☆48Updated 3 months ago
- Reference data: BED files, genes, transcripts, variations.☆82Updated 6 years ago
- identifying mutational significance in cancer genomes☆60Updated 2 years ago