☆37Mar 16, 2021Updated 5 years ago
Alternatives and similar repositories for VarBen
Users that are interested in VarBen are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆43Feb 9, 2024Updated 2 years ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆20Feb 20, 2021Updated 5 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Sep 28, 2022Updated 3 years ago
- Microsatellite instability (MSI) detection for tumor only data.☆114Apr 23, 2024Updated 2 years ago
- Portable database of microhaplotype marker and allele frequency data☆11Oct 2, 2025Updated 7 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- VarDict Java port☆141Jan 5, 2024Updated 2 years ago
- Gene fusion detection and visualization☆132Feb 21, 2022Updated 4 years ago
- Multi-nucleotide Variation Annotation Corrector☆11Dec 13, 2022Updated 3 years ago
- a lightweight bam file depth statistical tool☆162Sep 13, 2024Updated last year
- ☆11Jul 13, 2018Updated 7 years ago
- Annotate genomics variations of hg19 by using a BED format database, which construct from NCBI annotation release 104☆19Aug 4, 2023Updated 2 years ago
- Characterization of Germline variants☆101Mar 15, 2022Updated 4 years ago
- microsatellite instability detection using tumor only or paired tumor-normal data☆133Jan 6, 2021Updated 5 years ago
- A bioinformatics tool for SV detection and virus integration discovery☆21Sep 12, 2017Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Annotates variants in MAF with OncoKB annotation.☆144May 13, 2026Updated last week
- A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline☆208May 28, 2023Updated 2 years ago
- tools for adding mutations to existing .bam files, used for testing mutation callers☆249Oct 18, 2024Updated last year
- A standalone end-to-end data analysis pipeline for Duplex Sequencing☆21Oct 25, 2023Updated 2 years ago
- UVC, a very accurate small-variant caller (https://doi.org/10.1093/bib/bbab458)☆14May 18, 2025Updated last year
- Fragmentase Artifact Detection and Elimination☆13Mar 22, 2022Updated 4 years ago
- ☆19Mar 14, 2022Updated 4 years ago
- Detect and visualize target mutations by scanning FastQ files directly☆158Feb 10, 2022Updated 4 years ago
- ☆16Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- TransVar - multiway annotator for precision medicine☆129Apr 19, 2023Updated 3 years ago
- Filters for Next Generation Sequencing☆13Oct 31, 2024Updated last year
- Clinical interpretation of somatic mutations in cancer☆53Feb 20, 2025Updated last year
- Tools for working with genomic and high throughput sequencing data.☆366Updated this week
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆44Mar 25, 2023Updated 3 years ago
- ☆13Jun 7, 2024Updated last year
- FLT3-ITD script based on in-silico extension and clustering☆14Jun 9, 2021Updated 4 years ago
- Parse samtools pileup file to get how many bases and what kind of bases are called☆14Apr 30, 2024Updated 2 years ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆79Mar 9, 2020Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆116Apr 2, 2025Updated last year
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Aug 10, 2021Updated 4 years ago
- Reference data: BED files, genes, transcripts, variations.☆91Nov 28, 2017Updated 8 years ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆161Feb 12, 2026Updated 3 months ago
- Design primers for species-specific qPCR☆10Jun 1, 2017Updated 8 years ago
- Personal Cancer Genome Reporter (PCGR)☆278Updated this week
- Simulator for structural variants in various types of next-generation sequencing data☆11Mar 21, 2017Updated 9 years ago