nccl-jmli / VarBenLinks
☆36Updated 4 years ago
Alternatives and similar repositories for VarBen
Users that are interested in VarBen are comparing it to the libraries listed below
Sorting:
- ☆43Updated last year
- ☆54Updated 2 years ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆113Updated 7 months ago
- Microsatellite instability (MSI) detection for tumor only data.☆111Updated last year
- Helper scripts for biological data processing from Sentieon☆64Updated last month
- Microsatellite Analysis for Normal-Tumor InStability☆76Updated 3 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- A simplified pipeline for ctDNA sequencing data analysis☆37Updated 8 years ago
- Gene fusion detection and visualization☆127Updated 3 years ago
- ☆57Updated 5 years ago
- WisecondorX — An evolved WISECONDOR☆107Updated 2 months ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆68Updated 2 years ago
- Script to automatically create and run IGV snapshot batchscripts☆143Updated 2 years ago
- Reference data: BED files, genes, transcripts, variations.☆88Updated 7 years ago
- An automatic classification tool for PVS1 interpretation of null variants☆38Updated last year
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆77Updated 5 years ago
- R Package for Non Invasive Prenatal Testing (NIPT) analysis☆43Updated 6 years ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆37Updated 3 years ago
- xHLA: Fast and accurate HLA typing from short read sequence data☆113Updated 2 years ago
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆57Updated 4 years ago
- ☆89Updated 5 years ago
- CNV screening and annotation tool☆25Updated 9 years ago
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆91Updated 2 months ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆66Updated last year
- WISECONDOR (WIthin-SamplE COpy Number aberration DetectOR): Detect fetal trisomies and smaller CNV's in a maternal plasma sample using wh…☆46Updated last year
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 3 years ago
- identifying mutational significance in cancer genomes☆62Updated 3 years ago
- HLA typing for Sanger Based Test☆18Updated 2 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆51Updated last month
- ☆59Updated 4 months ago