Sentieon / sentieon-scriptsLinks
Helper scripts for biological data processing from Sentieon
☆64Updated 9 months ago
Alternatives and similar repositories for sentieon-scripts
Users that are interested in sentieon-scripts are comparing it to the libraries listed below
Sorting:
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆66Updated 2 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆81Updated 2 years ago
- FEELnc : FlExible Extraction of LncRNA☆90Updated 2 weeks ago
- A tool for profiling long STRs from short reads☆98Updated 4 years ago
- A suite of tools for detecting expansions of short tandem repeats☆82Updated 2 years ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆93Updated 2 months ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆72Updated 11 months ago
- WisecondorX — An evolved WISECONDOR☆101Updated last month
- ☆53Updated 2 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated 3 months ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆64Updated last year
- ☆36Updated 4 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆46Updated 4 months ago
- A Tool for integrated Quality Control and Preprocessing on FASTQ or BAM/CRAM files☆109Updated last year
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆115Updated last month
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆68Updated last year
- ☆58Updated 3 weeks ago
- My bioinfo toolbox☆50Updated 6 months ago
- Somatic structural variant caller for long-read data☆78Updated last month
- BAM Statistics, Feature Counting and Annotation☆149Updated 3 weeks ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆110Updated 4 months ago
- ⛏ HLA predictions from NGS shotgun data☆54Updated 2 months ago
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆24Updated 2 years ago
- ☆23Updated 2 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆50Updated 5 years ago
- New version of JACUSA -> 2.0☆27Updated this week
- ☆39Updated last year
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆61Updated 9 months ago