Sentieon / sentieon-scripts
Helper scripts for biological data processing from Sentieon
☆63Updated 3 months ago
Alternatives and similar repositories for sentieon-scripts:
Users that are interested in sentieon-scripts are comparing it to the libraries listed below
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆67Updated 5 months ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆61Updated 7 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 3 months ago
- Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆78Updated 2 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆88Updated 3 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆41Updated this week
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆104Updated this week
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆60Updated last year
- Somatic structural variant caller for long-read data☆60Updated this week
- Error correction of ONT transcript reads☆59Updated last year
- Variant Calling Pipeline Using GATK4 and Nextflow☆54Updated 2 years ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆114Updated 2 weeks ago
- FEELnc : FlExible Extraction of LncRNA☆85Updated 5 months ago
- ☆54Updated 3 years ago
- ☆70Updated 4 years ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆83Updated last week
- WisecondorX — An evolved WISECONDOR☆96Updated 5 months ago
- ☆39Updated 9 months ago
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆68Updated last year
- Wally: Visualization of aligned sequencing reads and contigs☆111Updated 2 months ago
- Allele-specific alignment sorting☆54Updated 2 years ago
- ☆52Updated 2 years ago
- Fast and accurate coordinate conversion between assemblies☆112Updated 4 months ago
- PCR Primer Quality Control☆59Updated 11 months ago
- A tool for profiling long STRs from short reads☆94Updated 3 years ago
- Simple pileup-based variant caller☆86Updated 10 months ago
- HiC uniform processing pipeline☆58Updated last year
- Collection of tools for the analysis of CpG data☆77Updated 2 weeks ago
- Genomic related tools☆71Updated 3 years ago
- Dfam Transposable Element Tools Docker container.☆88Updated 2 months ago