Sentieon / sentieon-scriptsLinks
Helper scripts for biological data processing from Sentieon
☆64Updated 8 months ago
Alternatives and similar repositories for sentieon-scripts
Users that are interested in sentieon-scripts are comparing it to the libraries listed below
Sorting:
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆72Updated 9 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆90Updated 3 years ago
- Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆80Updated 2 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated last month
- ☆58Updated 3 years ago
- New version of JACUSA -> 2.0☆27Updated last month
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆63Updated 11 months ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆46Updated 2 months ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆66Updated last year
- ☆53Updated 2 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- A tool for profiling long STRs from short reads☆97Updated 4 years ago
- FEELnc : FlExible Extraction of LncRNA☆87Updated 9 months ago
- ☆39Updated last year
- ☆36Updated 4 years ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆56Updated 2 years ago
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- ☆71Updated 5 years ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆113Updated 2 weeks ago
- Documenting usage and experience with bioinformatic tools☆40Updated 9 years ago
- HiC uniform processing pipeline☆60Updated last year
- Somatic structural variant caller for long-read data☆69Updated 2 weeks ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆82Updated 2 years ago
- Allele-specific alignment sorting☆58Updated 2 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 4 years ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆118Updated last month
- R Package for Non Invasive Prenatal Testing (NIPT) analysis☆41Updated 5 years ago
- Tip and tricks for BAM files☆85Updated 6 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆118Updated 2 months ago
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 4 months ago