Helper scripts for biological data processing from Sentieon
☆65Jan 27, 2026Updated last month
Alternatives and similar repositories for sentieon-scripts
Users that are interested in sentieon-scripts are comparing it to the libraries listed below
Sorting:
- Model files for Sentieon variant callers☆16Mar 10, 2026Updated last week
- A command-line interface for Sentieon pipelines☆14Mar 13, 2026Updated last week
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆115Apr 2, 2025Updated 11 months ago
- SV genotyping with long reads☆40Jul 3, 2023Updated 2 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆18Oct 5, 2019Updated 6 years ago
- Gene fusion detection and visualization☆131Feb 21, 2022Updated 4 years ago
- This tutorial is a guide to perform TWAS with the data used in Torres‐Rodríguez, J. Vladimir, et al. "Population‐level gene expression ca…☆23Feb 23, 2026Updated 3 weeks ago
- A software package for detection of copy number alterations from tumor samples☆12May 8, 2015Updated 10 years ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 3 months ago
- A VCF comparison engine for structual variant benchmarking☆23Sep 26, 2025Updated 5 months ago
- a lightweight bam file depth statistical tool☆161Sep 13, 2024Updated last year
- R package for binmap☆12Aug 3, 2023Updated 2 years ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆20Feb 20, 2021Updated 5 years ago
- ASCAT R package☆199Feb 12, 2026Updated last month
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Aug 19, 2020Updated 5 years ago
- CNV detection tool for targeted NGS panel data☆16Feb 28, 2022Updated 4 years ago
- A simple script to calculate q20/q30 percentages of a fastq file (can be gzipped)☆14Aug 31, 2016Updated 9 years ago
- Sentieon DNAseq☆23Dec 30, 2020Updated 5 years ago
- Package to design primers for MutaSeq and related methods☆11Jan 15, 2021Updated 5 years ago
- hot_scan is a free software to detect genomic regions unusually rich (hotspot) in a given pattern via scan statistics☆10Oct 17, 2013Updated 12 years ago
- Filters for Next Generation Sequencing☆12Oct 31, 2024Updated last year
- Gene Fusion Visualiser☆52Jan 15, 2023Updated 3 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Mar 6, 2024Updated 2 years ago
- ☆13Jun 7, 2024Updated last year
- Fast and accurate gene fusion detection from RNA-Seq data☆262Sep 21, 2025Updated 6 months ago
- Calculates the Variant Allele Fraction of variants in VCF files☆19Nov 28, 2024Updated last year
- Bayesian haplotype-based mutation calling☆323Feb 13, 2026Updated last month
- ☆18Aug 22, 2021Updated 4 years ago
- ☆12Sep 4, 2022Updated 3 years ago
- analysis pipeline for CODEC data☆13Oct 27, 2025Updated 4 months ago
- Whole genome workflows☆12Nov 9, 2024Updated last year
- Benchmarking variant calling in polyploids☆15Nov 26, 2021Updated 4 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆22Dec 14, 2021Updated 4 years ago
- A collection of tools to process single-cell omics datasets.☆51May 29, 2025Updated 9 months ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Apr 1, 2019Updated 6 years ago
- Filter and prioritize fusion calls☆20Feb 24, 2026Updated 3 weeks ago
- Integrative analysis of complex structural variants☆22Sep 7, 2020Updated 5 years ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆14Jan 15, 2017Updated 9 years ago
- barcode demultiplexing☆22Jun 4, 2019Updated 6 years ago