Alternatives and similar repositories for neoflow:

Users that are interested in neoflow are comparing it to the libraries listed below

• bm2-lab / pTuneos
  pTuneos: prioritizing Tumor neoantigen from next-generation sequencing data
  ☆35Updated 3 years ago
• XSLiuLab / Seq2Neo
  Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction
  ☆21Updated last year
• ed-lau / jcast
  Junction centric alternative splicing translator
  ☆19Updated 2 years ago
• BGI2016 / PSSMHCpan
  A novel PSSM based software for predicting class I peptide-HLA binding affinity
  ☆17Updated 7 years ago
• atc3 / maxquant_linux_guide
  A guide to running MaxQuant in Linux
  ☆32Updated 4 years ago
• angelettilab / scMouseBcellFlu
  ☆18Updated 2 years ago
• bzhanglab / OmicsEV
  A tool for large scale omics datasets evaluation
  ☆24Updated last year
• bm2-lab / MUSIC
  model-based understanding of single-cell CRISPR screening
  ☆23Updated last month
• tianshilu / QBRC-Neoantigen-Pipeline
  QBRC Neoantigen calling pipeline with CSiN calculation embedded
  ☆24Updated 2 years ago
• zhejilab / RibORF
  Identifying genome-wide translated open reading frames using ribosome profiling
  ☆21Updated last year
• ZilongZhang44 / single-cell-downstream-analysis
  Critical downstream analysis steps for single-cell RNA sequencing data
  ☆13Updated 3 years ago
• bm2-lab / neoFusion
  ☆13Updated 4 years ago
• bartongroup / Proteus
  R package for analysing proteomics data
  ☆49Updated last year
• alexyermanos / Platypus
  R package for the analysis of single-cell immune repertoires
  ☆41Updated last month
• uc-bd2k / GREIN
  GREIN : GEO RNA-seq Experiments Interactive Navigator
  ☆48Updated 5 years ago
• andrewrech / antigen.garnish
  ☆47Updated 2 years ago
• ratschlab / pancanatlas_code_public
  Public repository containing research code for the TCGA PanCanAtlas Splicing project
  ☆42Updated 4 years ago
• Biobix / proteoformer
  Integration ribosome profiling - mass spectrometry
  ☆14Updated last month
• zpliulab / scGENA
  single cell Gene co-Expression Network Analysis
  ☆9Updated 2 years ago
• mforde84 / RNAseq-Survival-Analysis-TCGA-KIRC
  ☆11Updated 6 years ago
• saezlab / cosmosR
  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…
  ☆59Updated 5 months ago
• aertslab / GENIE3
  GENIE3 (GEne Network Inference with Ensemble of trees) R-package
  ☆30Updated 2 years ago
• ylab-hi / ScanNeo
  A pipeline for identifying indel derived neoantigens using RNA-Seq data
  ☆29Updated 2 years ago
• mdozmorov / RNA-seq_notes
  A continually expanding collection of RNA-seq tools
  ☆47Updated 3 months ago
• pdxgx / neoepiscope
  predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data
  ☆26Updated last year
• djhn75 / RNAEditor
  ☆14Updated 2 years ago
• PSSUN / CircCode
  A Python3-base pipeline for translated circular RNA(circRNA) identification
  ☆16Updated 2 years ago
• antigenomics / vdjmatch
  ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities
  ☆38Updated 6 years ago
• broadinstitute / Celligner_ms
  Code related to the Celligner manuscript
  ☆44Updated 4 years ago
• zhangwei2015 / IMonitor
  This script use to analyze the immune repertoire sequenced by high throughtput sequencing
  ☆24Updated 3 years ago