bzhanglab / neoflowLinks
NeoFlow: a proteogenomics pipeline for neoantigen discovery
☆23Updated 8 months ago
Alternatives and similar repositories for neoflow
Users that are interested in neoflow are comparing it to the libraries listed below
Sorting:
- ☆16Updated 3 years ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆21Updated 2 years ago
- pTuneos: prioritizing Tumor neoantigen from next-generation sequencing data☆36Updated 3 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago
- Quickomics: exploring omics data in an intuitive, interactive and informative manner. Bioinformatics. 2021 Apr 26:btab255.☆41Updated 2 months ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆50Updated 6 years ago
- ☆13Updated 4 years ago
- A novel PSSM based software for predicting class I peptide-HLA binding affinity☆17Updated 8 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated last year
- ☆15Updated 3 years ago
- 🏺 Exploring novel tumor epitope identification☆34Updated 4 years ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆61Updated last week
- A guide to running MaxQuant in Linux☆33Updated 5 years ago
- This script use to analyze the immune repertoire sequenced by high throughtput sequencing☆25Updated 3 years ago
- Junction centric alternative splicing translator☆19Updated 2 years ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆18Updated 3 months ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆59Updated 7 months ago
- a Customized Proteogenomic Workflow for Neoantigen Prediction and Selection☆24Updated 3 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 2 years ago
- A continually expanding collection of RNA-seq tools☆51Updated 9 months ago
- Network Visualization using both GUI and Programming☆28Updated last month
- Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors☆32Updated 4 months ago
- An r package for proteomics data Analysis, developed from DEP.☆30Updated 3 months ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆25Updated 10 months ago
- Comparison of Adaptive Immune Receptor Repertoires☆27Updated 5 months ago
- R package for analysing proteomics data☆49Updated 2 years ago
- model-based understanding of single-cell CRISPR screening☆24Updated 7 months ago
- A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.☆27Updated last year
- Builds a PEP from SRA or GEO accessions☆52Updated this week