TheJacksonLaboratory / tcga_subtype_classification
Detecting cancer subtypes with machine learning.
☆10Updated 5 years ago
Alternatives and similar repositories for tcga_subtype_classification:
Users that are interested in tcga_subtype_classification are comparing it to the libraries listed below
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 4 years ago
- Analysis pipeline for our circSC manuscript☆13Updated 2 years ago
- ☆12Updated 5 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆12Updated 2 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- ☆23Updated 2 years ago
- Package for calculation of Homologous Recombination Deficiency☆13Updated 5 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- ☆15Updated 3 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆14Updated 2 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆19Updated 2 months ago
- Computational identification of targets for CAR-T cell therapy in AML☆16Updated 2 years ago
- Scripts used for the ACT paper☆12Updated 3 years ago
- Code associated with MIX-seq manuscript☆15Updated 4 years ago
- Software and analysis of metabolism studies across multiple cancer types☆9Updated 7 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- ☆49Updated 8 months ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- Analyzing chromatin accessibility data in R☆18Updated last year
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆12Updated last year
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆20Updated 5 months ago
- bioinformatics R test code☆13Updated 3 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 3 years ago
- ☆10Updated 4 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- MicrOSAtellite Instability Classifier☆15Updated 7 years ago