Sage-Bionetworks / CMSclassifier
☆28Updated 8 years ago
Related projects ⓘ
Alternatives and complementary repositories for CMSclassifier
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆42Updated 3 years ago
- GLASS consortium☆37Updated 4 years ago
- R-code used for single-cell RNA-Seq analysis of kidney data.☆17Updated 5 years ago
- An R package to time somatic mutations☆60Updated 3 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆76Updated 2 years ago
- ☆37Updated 4 years ago
- ☆74Updated 10 months ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆47Updated 2 years ago
- Repository for Cibersortx☆51Updated 3 years ago
- ☆46Updated last year
- Transcriptomic tools to classify bladder tumours according to six published molecular classifications : Baylor, UNC, MDA, Lund, CIT-Curie…☆25Updated last year
- identifying disease critical cell types and programs from single cell RNAseq☆51Updated 2 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆29Updated last year
- scRNA-seq cell type identification☆42Updated 5 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- Filtering of PDX samples for mouse derived reads☆27Updated last year
- ☆30Updated 2 years ago
- ☆8Updated 3 years ago
- Hypoxia associated molecular feature analysis☆35Updated 5 years ago
- SCDC☆42Updated last year
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data. Please download the R package from the RaceID3…☆15Updated 5 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆29Updated 2 years ago
- Mouse cell atlas☆59Updated 4 years ago
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated last year
- MutSig2CV from Lawrence et al. 2014☆30Updated 4 years ago
- An R package to plot maps of clone distributions in somatic evolution☆15Updated 10 months ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 3 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆43Updated 3 months ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆58Updated 2 months ago
- Homologous recombination deficiency in TCGA PanCancer Atlas☆25Updated 3 years ago