Sage-Bionetworks / CMSclassifierLinks
☆30Updated 9 years ago
Alternatives and similar repositories for CMSclassifier
Users that are interested in CMSclassifier are comparing it to the libraries listed below
Sorting:
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆80Updated 3 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- Repository for Cibersortx☆60Updated 4 years ago
- ☆88Updated 4 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆52Updated last year
- GLASS consortium☆42Updated 5 years ago
- ☆47Updated 9 months ago
- An R package to time somatic mutations☆64Updated 4 years ago
- SNV calling from single cell sequencing☆109Updated 10 months ago
- Repo for Physalia course Analysis of Single Cell RNA-Seq data☆32Updated 5 years ago
- This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…☆53Updated 2 months ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆78Updated 7 months ago
- ☆86Updated last month
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated 2 years ago
- ☆39Updated 5 years ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆51Updated 3 years ago
- ☆32Updated 3 years ago
- Hypoxia associated molecular feature analysis☆35Updated 5 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆23Updated 3 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆42Updated 4 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆59Updated 2 weeks ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆73Updated 7 years ago
- ☆73Updated 2 years ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆93Updated 3 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆57Updated 4 years ago