Alternatives and similar repositories for sequence_manipulation_suite

Users that are interested in sequence_manipulation_suite are comparing it to the libraries listed below

• EddyRivasLab / infernal
  RNA secondary structure/sequence profiles for homology search and alignment
  ☆119Updated last year
• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆76Updated 3 years ago
• mmcguffi / pLannotate
  Webserver and command line tool for annotating engineered plasmids
  ☆134Updated 4 months ago
• EBI-Metagenomics / genomes-catalogue-pipeline
  MGnify genome analysis pipeline
  ☆109Updated last week
• soedinglab / plass
  sensitive and precise assembly of short sequencing reads
  ☆162Updated last year
• biobakery / graphlan
  High-quality circular representations of taxonomic and phylogenetic trees
  ☆105Updated last year
• GSLBiotech / mafft
  Align multiple amino acid or nucleotide sequences.
  ☆67Updated 5 years ago
• mariodosreis / tai
  The tRNA adaptation index
  ☆19Updated 7 months ago
• medema-group / BiG-SCAPE
  Similarity networks of biosynthetic gene clusters
  ☆145Updated this week
• kblin / ncbi-acc-download
  Download files from NCBI Entrez by accession
  ☆131Updated last year
• snugel / cas-offinder
  An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.
  ☆95Updated 3 years ago
• IndexThePlanet / Logan
  Logan Unitigs and Contigs
  ☆178Updated 2 months ago
• steineggerlab / Metabuli
  Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
  ☆158Updated 3 weeks ago
• stuckyb / seqtrace
  User-friendly software for viewing and processing Sanger DNA sequencing trace files.
  ☆32Updated 7 years ago
• ponnhide / plasmidviewer
  Python library to visualize circular plasmid maps
  ☆28Updated 4 years ago
• KatyBrown / CIAlign
  ☆133Updated last year
• Merck / deepbgc
  BGC Detection and Classification Using Deep Learning
  ☆157Updated 2 years ago
• medema-group / bigslice
  A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data
  ☆90Updated 4 months ago
• Russel88 / CRISPRCasTyper
  CCTyper: Automatic detection and subtyping of CRISPR-Cas operons
  ☆104Updated last year
• AnimaTardeb / G4Hunter
  G4Hunter (2012_2015)- IECB - Bordeaux
  ☆16Updated 5 years ago
• guyleonard / get_jgi_genomes
  A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
  ☆38Updated 6 months ago
• DessimozLab / read2tree
  a tool for inferring species tree from sequencing reads
  ☆155Updated 2 months ago
• tao-bioinfo / PrimerServer2
  PrimerServer2: a high-throughput primer design and specificity-checking platform
  ☆80Updated 3 years ago
• mdbaron42 / pyBoxshade
  Desktop application for colouring/shading sequence alignments
  ☆29Updated 2 years ago
• jrjhealey / bioinfo-tools
  Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.
  ☆62Updated 5 years ago
• rcedgar / muscle
  Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, e…
  ☆261Updated 3 months ago
• MiguelMSandin / SSNetworks
  A brief, quick and dirty introduction to Sequence Similarity Networks
  ☆31Updated 2 years ago
• SysBioChalmers / RAVEN
  The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
  ☆119Updated last week
• BioinformaticsLabAtMUN / Promotech
  Machine-learning-based general bacterial promoter prediction tool.
  ☆51Updated 2 years ago
• gamcil / cblaster
  Find clustered hits from a BLAST search
  ☆126Updated 3 weeks ago