EnvGen / DEGEPRIME
A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies
☆30Updated last year
Alternatives and similar repositories for DEGEPRIME:
Users that are interested in DEGEPRIME are comparing it to the libraries listed below
- A shiny package for microbiome functional enrichment analysis☆37Updated 2 weeks ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- ☆22Updated 5 years ago
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆15Updated 2 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆28Updated 3 months ago
- Trimming tool for Oxford Nanopore sequence data☆21Updated 3 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- OPAL: Open-community Profiling Assessment tooL☆28Updated 3 months ago
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆38Updated 2 years ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 7 years ago
- HoCoRT - Remove specific organisms from sequencing reads☆17Updated 4 months ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- repo for cicese metatranscriptomics workshop, nov 2018☆14Updated 5 years ago
- ☆24Updated 2 weeks ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- ☆23Updated 6 years ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated 11 months ago
- Workflows for metagenomic sequence data processing and analysis.☆17Updated 5 years ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated 10 months ago
- ☆16Updated 4 months ago
- Metagenomics Workshop☆28Updated 8 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- A repository for the lessons and notebooks used for Binder tutorials☆13Updated 4 years ago
- Documentation for Evolview☆27Updated 3 years ago
- ☆20Updated 8 years ago
- A microbial profiling framework for metagenomic analysis☆24Updated 5 years ago
- A repository with scripts to run pipeline that are commonly used in the Meren Lab☆11Updated 7 years ago