EnvGen / DEGEPRIMELinks
A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies
☆30Updated 2 years ago
Alternatives and similar repositories for DEGEPRIME
Users that are interested in DEGEPRIME are comparing it to the libraries listed below
Sorting:
- A shiny package for microbiome functional enrichment analysis☆37Updated 3 months ago
- OPAL: Open-community Profiling Assessment tooL☆29Updated 6 months ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Trimming tool for Oxford Nanopore sequence data☆21Updated 4 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆16Updated 2 years ago
- A reference viral database (RVDB)☆26Updated 6 years ago
- Evolutionary Transcriptomics with R☆44Updated last week
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆22Updated last month
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆67Updated last week
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆41Updated 5 years ago
- Some useful python scripts for biologists☆32Updated 7 months ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated last year
- Generate unique KMERs for every contig in a FASTA file☆48Updated 2 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- Dual barcode and primer demultiplexing for MinION sequenced reads☆39Updated 2 years ago
- ☆22Updated 5 years ago
- finding conserved regions in highly diverse genomes☆15Updated last month
- The Zika bioinformatics pipeline☆35Updated 5 years ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆39Updated 3 weeks ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆30Updated 5 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 7 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆32Updated 5 months ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation☆27Updated last year