EnvGen / DEGEPRIMELinks
A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies
☆32Updated 2 years ago
Alternatives and similar repositories for DEGEPRIME
Users that are interested in DEGEPRIME are comparing it to the libraries listed below
Sorting:
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 9 months ago
- Trimming tool for Oxford Nanopore sequence data☆22Updated 4 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- A shiny package for microbiome functional enrichment analysis☆36Updated 2 weeks ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆42Updated 5 years ago
- Generate unique KMERs for every contig in a FASTA file☆48Updated 3 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- Multilocus sequence typing by blast using the schemes from PubMLST☆30Updated 3 years ago
- OPAL: Open-community Profiling Assessment tooL☆29Updated 10 months ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆37Updated last year
- Highly sensitive pathogen detection☆12Updated 5 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year
- MetaCompass: Reference-guided Assembly of Metagenomes☆40Updated 3 months ago
- Automatically design multiplex PCR primer pairs for diverse templates☆30Updated last year
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆68Updated this week
- transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation☆27Updated last year
- repo for cicese metatranscriptomics workshop, nov 2018☆14Updated 5 years ago
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆16Updated 2 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆34Updated last year
- HoCoRT - Remove specific organisms from sequencing reads☆17Updated 10 months ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated last month
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago