ICBI / viGENLinks
viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data
☆28Updated last year
Alternatives and similar repositories for viGEN
Users that are interested in viGEN are comparing it to the libraries listed below
Sorting:
- Long read to rMATS☆32Updated 2 years ago
- Gene Fusion Visualiser☆51Updated 3 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated 5 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆58Updated last year
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆64Updated 3 weeks ago
- RPKM for RNASeq counts☆16Updated 5 years ago
- ENCODE whole-genome bisulfite sequencing (WGBS) pipeline☆32Updated 3 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆30Updated 4 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 10 months ago
- A script to make downloading of SRA/GEO data easier☆33Updated 2 years ago
- A Python library to visualize and analyze long-read transcriptomes☆65Updated 3 weeks ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆73Updated last year
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- Version II of Mandalorion☆32Updated 7 years ago
- A software for calculating telomere length☆73Updated 7 years ago
- RNAseq pipeline based on snakemake☆26Updated 2 years ago
- for visual evaluation of read support for structural variation☆56Updated last year
- ☆50Updated 4 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆30Updated 7 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆36Updated 3 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆36Updated 2 years ago
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- Tools for analyzing DNA methylation data☆44Updated last month
- SingleCell Nanopore sequencing data analysis☆63Updated 8 months ago
- Detection of viruses from RNA-Seq on human samples☆46Updated 2 years ago
- Interactive multiscale visualization for structural variation in human genomes☆71Updated 2 weeks ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago