viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data
☆28Oct 8, 2024Updated last year
Alternatives and similar repositories for viGEN
Users that are interested in viGEN are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CircSplice☆12Feb 27, 2019Updated 7 years ago
- Detection of viruses from RNA-Seq on human samples☆46Mar 18, 2023Updated 3 years ago
- Copy Number Methods for Detection and Genome Wide Association Tests☆22Nov 4, 2024Updated last year
- VarSkip multiplex PCR designs for SARS-CoV-2 sequencing☆14Jun 14, 2022Updated 3 years ago
- Gene expression viewer template☆11Aug 30, 2017Updated 8 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.☆14Nov 11, 2019Updated 6 years ago
- cnv-seq with custom bugfix☆10Mar 23, 2013Updated 13 years ago
- de novo virus assembler of Illumina paired reads☆58May 17, 2021Updated 4 years ago
- Detecting cancer subtypes with machine learning.☆10Feb 5, 2020Updated 6 years ago
- Documentation for analyzing SARS-Cov2 samples.☆12Jun 4, 2020Updated 5 years ago
- Integrating influenza antigenic dynamics with molecular evolution☆12May 28, 2015Updated 10 years ago
- Python Programming for Biologists☆12Dec 3, 2025Updated 3 months ago
- SARs-CoV-2 Primer schemes☆16May 14, 2025Updated 10 months ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆50Feb 26, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Aug 25, 2020Updated 5 years ago
- A shell to facilitate loading / running CIBERSORT software in structured environments☆26May 9, 2018Updated 7 years ago
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆20Sep 12, 2021Updated 4 years ago
- ☆12Aug 23, 2018Updated 7 years ago
- Galaxy tools and wrappers for sequence analysis☆17Jun 11, 2024Updated last year
- single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.☆20Jan 22, 2026Updated 2 months ago
- A tool to detect structural variant☆17Mar 27, 2023Updated 2 years ago
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆36Mar 13, 2022Updated 4 years ago
- Integrated platform for unifying scientific workflow management and graph databases for transcriptome data analysis.☆10Oct 19, 2018Updated 7 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆13Mar 20, 2021Updated 5 years ago
- Superseded by https://github.com/MD-Anderson-Bioinformatics/BatchEffectsPackage☆12Aug 13, 2020Updated 5 years ago
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆38Jan 22, 2026Updated 2 months ago
- ☆10Sep 28, 2017Updated 8 years ago
- A bioinformatics tool for SV detection and virus integration discovery☆21Sep 12, 2017Updated 8 years ago
- Workflows for metagenomic sequence data processing and analysis.☆16Jul 30, 2019Updated 6 years ago
- Influenza genome analysis Nextflow workflow☆31Sep 15, 2025Updated 6 months ago
- Generate unique KMERs for every contig in a FASTA file☆49Aug 17, 2022Updated 3 years ago
- A pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing data☆12Apr 25, 2023Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆11Jul 31, 2019Updated 6 years ago
- The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating fro…☆36Apr 17, 2024Updated last year
- A pipeline for viral identification from metagenomic samples☆27Oct 15, 2017Updated 8 years ago
- CNV screening and annotation tool☆25Oct 31, 2016Updated 9 years ago
- Virus discovery☆17Mar 10, 2026Updated 2 weeks ago
- MethyScan: A tool for methylation specific PCR primer design and evaluation☆15Aug 20, 2021Updated 4 years ago
- Scalable inference of gene regulatory networks using Apache Spark and XGBoost☆20Feb 8, 2018Updated 8 years ago