ICBI / viGEN
viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data
☆27Updated 5 months ago
Alternatives and similar repositories for viGEN:
Users that are interested in viGEN are comparing it to the libraries listed below
- Gene Fusion Visualiser☆51Updated 2 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆27Updated 3 years ago
- RNAseq pipeline based on snakemake☆25Updated 2 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆42Updated this week
- Long-read Isoform Quantification and Analysis☆39Updated this week
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated last year
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 5 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆48Updated 4 years ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated last week
- Master of Pores 2☆23Updated 3 months ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 10 months ago
- A software for calculating telomere length☆68Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- ☆48Updated 4 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 6 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆50Updated 3 weeks ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- Tool package to perform in-silico CRISPR analysis and assessment☆24Updated 10 months ago
- ☆26Updated 3 weeks ago
- Splice junction analysis and filtering from BAM files☆40Updated 2 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- visual analysis of your VCF files☆32Updated 2 years ago
- Tip and tricks for VCF files☆21Updated 6 years ago
- Version II of Mandalorion☆32Updated 6 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆45Updated this week
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆33Updated this week
- Tip and tricks for BAM files☆85Updated 6 years ago