OpenGene / VisualMSI
Detect and visualize microsatellite instability(MSI) from NGS data
☆31Updated 5 years ago
Alternatives and similar repositories for VisualMSI:
Users that are interested in VisualMSI are comparing it to the libraries listed below
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆20Updated 2 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 6 years ago
- A simplified pipeline for ctDNA sequencing data analysis☆36Updated 7 years ago
- ☆45Updated 5 years ago
- identifying mutational significance in cancer genomes☆60Updated 2 years ago
- CNV screening and annotation tool☆24Updated 8 years ago
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆22Updated last year
- QDNAseq package for Bioconductor☆49Updated 6 months ago
- Documenting usage and experience with bioinformatic tools☆41Updated 9 years ago
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆55Updated 3 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆45Updated 6 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆96Updated 2 years ago
- R Package for Non Invasive Prenatal Testing (NIPT) analysis☆41Updated 5 years ago
- CN-Learn☆29Updated 5 years ago
- Tumor Mutational Burden☆56Updated 5 months ago
- R package designed to simplify structural variant analysis☆71Updated 3 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆96Updated 3 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆31Updated 3 years ago
- WISECONDOR (WIthin-SamplE COpy Number aberration DetectOR): Detect fetal trisomies and smaller CNV's in a maternal plasma sample using wh…☆44Updated 9 months ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆18Updated 3 years ago
- Comprehensive benchmark of structural variant callers☆45Updated 3 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆67Updated 4 months ago
- ☆38Updated 11 months ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆36Updated 2 years ago
- Concordance and contamination estimator for tumor–normal pairs☆56Updated 3 months ago
- Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…☆56Updated 4 years ago
- BIC@MSKCC Variants Pipeline☆23Updated last year
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆33Updated 6 months ago
- tools to find circRNAs in RNA-seq data☆40Updated 7 years ago