jasminezhoulab / CancerLocator
A Java package for non-invasive cancer diagnosis using methylation profiles of cell-Free DNA.
☆14Updated 6 years ago
Alternatives and similar repositories for CancerLocator:
Users that are interested in CancerLocator are comparing it to the libraries listed below
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 6 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- ☆19Updated 7 years ago
- Scripts involved in our workflow for detecting CNVs from WGS data using read depth-based methods☆46Updated 2 years ago
- ☆23Updated 6 years ago
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆22Updated 5 years ago
- ☆28Updated last year
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆31Updated 3 years ago
- Fork of the Polysolver project☆31Updated 5 years ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- Irons out wrinkles in noisy coverage data using robust PCA☆13Updated this week
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- Gene Fusion Visualiser☆51Updated 2 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 11 months ago
- ☆29Updated 4 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- Benchmarking of CNV calling tools☆18Updated 5 years ago
- A flexible framework for nucleosome profiling of cell-free DNA☆27Updated last year
- WISECONDOR (WIthin-SamplE COpy Number aberration DetectOR): Detect fetal trisomies and smaller CNV's in a maternal plasma sample using wh…☆44Updated 11 months ago
- cnv-seq with custom bugfix☆10Updated 12 years ago
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago
- Documenting usage and experience with bioinformatic tools☆41Updated 9 years ago
- ☆38Updated 7 months ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆30Updated last year
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆22Updated last year
- Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from…☆28Updated 2 months ago