jasminezhoulab / CancerLocatorLinks
A Java package for non-invasive cancer diagnosis using methylation profiles of cell-Free DNA.
☆15Updated 6 years ago
Alternatives and similar repositories for CancerLocator
Users that are interested in CancerLocator are comparing it to the libraries listed below
Sorting:
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Updated 6 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- ☆31Updated last year
- ☆19Updated 7 years ago
- Clinical interpretation of somatic mutations in cancer☆50Updated 10 months ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 4 months ago
- Python package to annotate and visualize gene fusions.☆65Updated last year
- Microsatellite Analysis for Normal-Tumor InStability☆75Updated 3 years ago
- ☆53Updated 3 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆30Updated 7 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data☆75Updated 3 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- R Package for Non Invasive Prenatal Testing (NIPT) analysis☆44Updated 6 years ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆37Updated 3 years ago
- cnv-seq with custom bugfix☆10Updated 12 years ago
- A flexible framework for nucleosome profiling of cell-free DNA☆28Updated 2 years ago
- Scripts involved in our workflow for detecting CNVs from WGS data using read depth-based methods☆46Updated 3 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 3 years ago
- identifying mutational significance in cancer genomes☆62Updated 3 years ago
- ☆69Updated 3 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆90Updated 2 months ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 3 years ago
- ☆43Updated last year
- Fork of the Polysolver project☆33Updated 6 years ago
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆61Updated 6 years ago
- ☆25Updated 3 years ago
- ☆40Updated 5 months ago
- 3D hotspot mutation proximity analysis tool☆51Updated 2 years ago
- Motif Scan and Enrichment Analysis (MoSEA)☆17Updated 5 years ago