A Java package for non-invasive cancer diagnosis using methylation profiles of cell-Free DNA.
☆17Apr 2, 2019Updated 7 years ago
Alternatives and similar repositories for CancerLocator
Users that are interested in CancerLocator are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Disease Prediction by Cell-Free DNA Methylation☆11Feb 8, 2018Updated 8 years ago
- MONOD2 is a toolkit for methylation haplotype analysis of bisulfite sequencing data☆40Feb 20, 2019Updated 7 years ago
- Important papers relating to the biology of cell free DNA☆19Sep 21, 2018Updated 8 years ago
- ☆25Jan 18, 2022Updated 4 years ago
- A flexible framework for nucleosome profiling of cell-free DNA☆10May 12, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data☆82Aug 18, 2022Updated 4 years ago
- mSINGS: Detecting Microsatellite Instability By Next-Generation Sequencing This project provides a program with a command-line interfa…☆11Jun 6, 2023Updated 3 years ago
- ☆33Mar 5, 2024Updated 2 years ago
- Circular binary segmentation algorithm for copy number data☆12Oct 8, 2023Updated 3 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆25May 17, 2016Updated 10 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆103Sep 15, 2026Updated last month
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆59Mar 29, 2021Updated 5 years ago
- MEXPRESS is a data visualization tool designed for the visualization of TCGA expression, DNA methylation and clinical data.☆15Jul 23, 2020Updated 6 years ago
- Mutato is a toolkit for mutation analysis using DNA sequencing data☆12Nov 20, 2025Updated 11 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆222Mar 20, 2024Updated 2 years ago
- Multiplex Primer Design☆21Oct 30, 2020Updated 6 years ago
- Clin-mNGS: Automated pipeline for pathogen detection from clinical metagenomic data☆19Jun 29, 2021Updated 5 years ago
- NGS DNA best practice pipeline for Illumina sequencing - alignment, variant calling, annotation and QC☆18Aug 22, 2025Updated last year
- a R package to identify neoantigens from NGS data☆18Jun 29, 2017Updated 9 years ago
- ☆10Oct 13, 2026Updated 3 weeks ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆39Sep 16, 2025Updated last year
- ☆10Nov 18, 2022Updated 3 years ago
- Papillomavirus genome annotation tool☆10May 2, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A pan-cancer genome-wide analysis reveals tumour dependencies by induction of nonsense-mediated decay☆15Nov 2, 2020Updated 6 years ago
- Tools for working with WGBS data☆14Jul 3, 2017Updated 9 years ago
- Scripts for analyses in the Griffin manuscript☆13Dec 14, 2022Updated 3 years ago
- Multiplex Primer Design☆13May 3, 2020Updated 6 years ago
- VIPER (Variant InsPector and Expert Rating tool) can be utilised to view variant calls and decide whether or not those are true or false …☆16Jan 17, 2022Updated 4 years ago
- Odyssey: A semi-automated pipeline for the prepping, cleaning, phasing, imputing, analyzing, and visualizing genomic data☆19May 28, 2021Updated 5 years ago
- Retrieve sequences flanked by an arbitrary number of primers from a nucleotide collection.☆11Jun 11, 2021Updated 5 years ago
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Jan 21, 2025Updated last year
- Text-mined knowledgebase for drivers, oncogenes and tumor suppressors in cancer☆42Oct 23, 2026Updated 2 weeks ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- cfTools is a versatile R package of analyzing cell-free DNA data.☆11Jun 12, 2026Updated 4 months ago
- Performs BLAST on compressed proteomic data.☆18Jun 15, 2015Updated 11 years ago
- Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)☆15Jul 15, 2016Updated 10 years ago
- Targeted Amplicon Bisulfite Sequencing Analysis Tool☆11May 8, 2019Updated 7 years ago
- CNV Rapid Aberration Detection And Reporting☆13Mar 2, 2021Updated 5 years ago
- ☆11Aug 21, 2018Updated 8 years ago
- Python package for cancer early detection based on a model of cancer evolution and circulating tumor DNA (ctDNA) shedding☆13Jan 8, 2021Updated 5 years ago